Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_M13
(888 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 170 2e-43
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 80 4e-16
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 27 4.7
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 26 6.2
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p... 26 6.2
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo... 26 8.2
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 26 8.2
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 170 bits (414), Expect = 2e-43
Identities = 87/161 (54%), Positives = 106/161 (65%)
Frame = +2
Query: 404 GKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAIRXXXXXXXXXXXXXXXXX 583
GKTAIAMG+AQ+LG DTPF +++ SE++SLEMSKTEAL QA+R
Sbjct: 77 GKTAIAMGMAQSLGSDTPFVTLSASEVYSLEMSKTEALLQALRKSIGVRIKEETEIIEGE 136
Query: 584 XXXXXXXXXXXXXXXXXXXLTLKTTDMETNYDMGAKMIDSLLKEKVQAGDVITIDKATGK 763
LT+++TDMET YD+G KMIDSL KEKV AGDVI+IDK+ G+
Sbjct: 137 VVEVQIDRSITGGNKQGK-LTIRSTDMETVYDLGTKMIDSLTKEKVLAGDVISIDKSVGR 195
Query: 764 INKLGRSFARARDYDATGQQAXFVQCPEGXLQXXKEVVHPV 886
+ KLGRSF+RARDYDA G FVQCP+G +Q KEVVH V
Sbjct: 196 VTKLGRSFSRARDYDAMGADTRFVQCPQGEIQKRKEVVHTV 236
Score = 106 bits (254), Expect = 5e-24
Identities = 46/67 (68%), Positives = 62/67 (92%)
Frame = +1
Query: 205 ITRIERIGAHSHIRGLGLDDSLEPRQVSQGMVGQKMARKAAGVILQMIREGKIAGRAVLL 384
++++ERIGAHSHI+G+GL+D+LEP++ SQGMVGQ AR+AAGVIL+MI+EG+IAGRA+L+
Sbjct: 11 VSKLERIGAHSHIKGIGLNDNLEPKESSQGMVGQVKARRAAGVILKMIQEGRIAGRAILM 70
Query: 385 AGQPGTG 405
AG P TG
Sbjct: 71 AGPPSTG 77
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 80.2 bits (189), Expect = 4e-16
Identities = 51/166 (30%), Positives = 77/166 (46%), Gaps = 5/166 (3%)
Frame = +2
Query: 404 GKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAIRXXXXXXXXXXXXXXXXX 583
GKTA+A+ +AQ LGP PF M GSE++S E+ KTEAL + R
Sbjct: 76 GKTALALAIAQELGPKVPFCPMVGSEVYSSEIKKTEALMENFRRAIGLRVKETKEVYEGE 135
Query: 584 XXXXXXXXXXXXXXXXXXXLT-----LKTTDMETNYDMGAKMIDSLLKEKVQAGDVITID 748
++ LKT + + +SL +E+V GDVI I+
Sbjct: 136 VTEMVPEEAENPLGGYGKTISHVLLGLKTHKGTKQLKLDPSIYESLQREQVSTGDVIYIE 195
Query: 749 KATGKINKLGRSFARARDYDATGQQAXFVQCPEGXLQXXKEVVHPV 886
TG + ++GRS A A ++D ++ +V P+G + KE+V V
Sbjct: 196 ANTGAVKRVGRSDAYATEFDLEAEE--YVPMPKGEVHKRKEIVQDV 239
Score = 68.9 bits (161), Expect = 9e-13
Identities = 33/74 (44%), Positives = 44/74 (59%)
Frame = +1
Query: 184 QVQEVRSITRIERIGAHSHIRGLGLDDSLEPRQVSQGMVGQKMARKAAGVILQMIREGKI 363
Q+ EV+ R RI HSHI+GLGL + V G +GQ+ AR+A G+I +I+ K
Sbjct: 3 QISEVKGNGRDNRITTHSHIKGLGLKEDGTCESVGGGFIGQEKAREACGIITDLIKSKKF 62
Query: 364 AGRAVLLAGQPGTG 405
G+ VL AG GTG
Sbjct: 63 GGKGVLFAGGAGTG 76
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 4.7
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 674 YDMGAKMIDSLLKEKVQAGDVITIDKATGK-INKLGRSFARARD-YDATGQQAXFVQCP 844
Y + + D LK+KV A D T+DKA + I L + A+D ++A ++ V P
Sbjct: 545 YSLRNSLDDPNLKDKVDASDKETVDKAVKETIEWLDSNTTAAKDEFEAKQKELESVANP 603
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 26.2 bits (55), Expect = 6.2
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -3
Query: 586 DLPFNYLRLLLNSNTYRLPDGLR*SLSFTHFQREYLRTGHARKWCVRSQSLC*SHSDG 413
DLP L + + LP+ + SLS + R ++ +G AR + SL +DG
Sbjct: 339 DLPIETLNKHIETTNTHLPEDRKVSLSLVNGPRSFVVSGPARSLYGLNLSLRKEKADG 396
>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 181 AQVQEVRSITRIERIGAHSHIRGLGLDD 264
A +++V T I+ +G HSHIR + D
Sbjct: 252 ASIRKVHPNTPIQILGGHSHIRDFAVYD 279
>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 25.8 bits (54), Expect = 8.2
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = -2
Query: 290 CDTCL-GSKESSKPSPLM---WECAPILSMRVIERTSCTC 183
CD+C S + SK S + W+ P + +ERTS TC
Sbjct: 223 CDSCFKSSPKHSKTSCIRTVDWKNPPTILQIQLERTSYTC 262
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 25.8 bits (54), Expect = 8.2
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +3
Query: 441 WDRTHHLRAWPV 476
W + HH+R WP+
Sbjct: 532 WSKDHHVRLWPI 543
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,997,643
Number of Sequences: 5004
Number of extensions: 53447
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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