Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_M13
(888 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0608 - 4399252-4399894,4401640-4402427 120 2e-27
01_06_1273 + 35896320-35896400,35896548-35896736,35897817-358979... 81 1e-15
07_01_0564 - 4183441-4183530,4183683-4183752,4183972-4184063,418... 79 4e-15
07_03_1041 + 23468867-23469215,23469231-23469348,23470920-234710... 79 5e-15
11_06_0725 - 26703701-26704669 30 2.8
02_04_0114 + 19879468-19880671,19882007-19882179,19882265-198826... 29 4.9
12_01_0777 - 7095081-7096259,7096636-7096725,7096827-7096902,709... 29 6.5
03_02_0663 + 10256898-10258915,10259162-10259248,10259463-102597... 29 6.5
06_03_1249 - 28688997-28689248,28689469-28689533,28690016-286900... 28 8.6
04_04_0369 - 24745140-24745510,24746005-24746089,24746746-247468... 28 8.6
04_03_0784 - 19610370-19611548,19611830-19611919,19612001-196120... 28 8.6
02_03_0202 + 16359539-16359763,16360113-16360193,16361362-163616... 28 8.6
>06_01_0608 - 4399252-4399894,4401640-4402427
Length = 476
Score = 120 bits (289), Expect = 2e-27
Identities = 55/82 (67%), Positives = 66/82 (80%)
Frame = +2
Query: 641 LTLKTTDMETNYDMGAKMIDSLLKEKVQAGDVITIDKATGKINKLGRSFARARDYDATGQ 820
LTLKTTDMET Y++G KMI++L KEKVQ+GDV+ +DKA+GK+ KLGRS R+RDYDA G
Sbjct: 171 LTLKTTDMETVYELGGKMIEALGKEKVQSGDVVALDKASGKVTKLGRSIGRSRDYDAVGP 230
Query: 821 QAXFVQCPEGXLQXXKEVVHPV 886
FV+CPEG LQ KEVVH V
Sbjct: 231 HTKFVKCPEGELQKRKEVVHCV 252
Score = 118 bits (283), Expect = 8e-27
Identities = 57/74 (77%), Positives = 65/74 (87%)
Frame = +1
Query: 184 QVQEVRSITRIERIGAHSHIRGLGLDDSLEPRQVSQGMVGQKMARKAAGVILQMIREGKI 363
++ E R +TRIERIGAHSHIRGLGLD SLE R S+GMVGQ AR+AAG+ILQ+IR+GKI
Sbjct: 6 RLSESRDLTRIERIGAHSHIRGLGLDSSLEARGSSEGMVGQLPARRAAGLILQLIRQGKI 65
Query: 364 AGRAVLLAGQPGTG 405
AGRAVLLAGQPGTG
Sbjct: 66 AGRAVLLAGQPGTG 79
Score = 67.7 bits (158), Expect = 1e-11
Identities = 30/43 (69%), Positives = 39/43 (90%)
Frame = +2
Query: 404 GKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAIR 532
GKTA+AMG+A++LG +TPF S+A SE+FSL++SKTEALTQA R
Sbjct: 79 GKTALAMGIAKSLGAETPFASVAASELFSLDLSKTEALTQAFR 121
>01_06_1273 +
35896320-35896400,35896548-35896736,35897817-35897948,
35898093-35898242,35898564-35898719,35899462-35899596,
35899706-35899771,35900016-35900122,35900258-35900357,
35900436-35900527,35901026-35901095,35901229-35901318
Length = 455
Score = 81.0 bits (191), Expect = 1e-15
Identities = 37/74 (50%), Positives = 55/74 (74%)
Frame = +1
Query: 184 QVQEVRSITRIERIGAHSHIRGLGLDDSLEPRQVSQGMVGQKMARKAAGVILQMIREGKI 363
+++EV+S + +RI H+HI+GLGLD + ++ G VGQ AR+AAG+++ MIR+ K+
Sbjct: 2 RIEEVQSAAKKQRIATHTHIKGLGLDANGAAIGLASGFVGQAAAREAAGLVVDMIRQKKM 61
Query: 364 AGRAVLLAGQPGTG 405
AGRA+LLAG P TG
Sbjct: 62 AGRALLLAGPPATG 75
Score = 77.8 bits (183), Expect = 1e-14
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 5/166 (3%)
Frame = +2
Query: 404 GKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAIRXXXXXXXXXXXXXXXXX 583
GKTA+A+G++Q LG PF M GSE++S E+ KTE L + R
Sbjct: 75 GKTALALGISQELGSKVPFCPMVGSEVYSSEVKKTEVLMENFRRAIGLRIKENKEVYEGE 134
Query: 584 XXXXXXXXXXXXXXXXXXXLT-----LKTTDMETNYDMGAKMIDSLLKEKVQAGDVITID 748
++ LKT + + D+L+KEKV GDVI I+
Sbjct: 135 VTELSPEEAESTTSGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIKEKVAVGDVIYIE 194
Query: 749 KATGKINKLGRSFARARDYDATGQQAXFVQCPEGXLQXXKEVVHPV 886
+G + ++GR + A +YD ++ +V P+G + KE+V V
Sbjct: 195 ANSGAVKRVGRCDSFATEYDLEAEE--YVPIPKGEVHKKKEIVQDV 238
>07_01_0564 -
4183441-4183530,4183683-4183752,4183972-4184063,
4184141-4184240,4184372-4184478,4184703-4184768,
4184879-4185013,4185653-4185808,4186113-4186262,
4186426-4186557,4187604-4187693
Length = 395
Score = 79.4 bits (187), Expect = 4e-15
Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 5/166 (3%)
Frame = +2
Query: 404 GKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAIRXXXXXXXXXXXXXXXXX 583
GKTA+A+G++Q LG PF M GSE++S E+ KTE L + R
Sbjct: 15 GKTALALGISQELGSKVPFCPMVGSEVYSSEVKKTEVLMENFRRAIGLRIKENKEVYEGE 74
Query: 584 XXXXXXXXXXXXXXXXXXXLT-----LKTTDMETNYDMGAKMIDSLLKEKVQAGDVITID 748
++ LKT + + D+L+KEKV GDVI I+
Sbjct: 75 VTELSPEEAESTTGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIKEKVSVGDVIYIE 134
Query: 749 KATGKINKLGRSFARARDYDATGQQAXFVQCPEGXLQXXKEVVHPV 886
+G + ++GR A A +YD ++ +V P+G + KE+V V
Sbjct: 135 ANSGAVKRVGRCDAFATEYDLEAEE--YVPIPKGEVHKKKEIVQDV 178
>07_03_1041 +
23468867-23469215,23469231-23469348,23470920-23471041,
23471074-23471532,23474675-23474949,23475179-23475315,
23475353-23475405,23475456-23475516,23475606-23475707,
23476380-23476488,23476568-23476693,23476986-23477037,
23477236-23477317,23477395-23477488,23478166-23478262,
23478605-23478698,23479458-23479530,23480198-23480371,
23480526-23480648,23481396-23481533,23482270-23482446
Length = 1004
Score = 79.0 bits (186), Expect = 5e-15
Identities = 56/156 (35%), Positives = 77/156 (49%), Gaps = 10/156 (6%)
Frame = +2
Query: 422 MGLAQALGPDTPFTSMAGSEIFSLEMSK-----TEALTQAI-----RXXXXXXXXXXXXX 571
MG+A++LG +TPF S+A SE+FSL++SK T+A ++I
Sbjct: 1 MGIAESLGAETPFASVAASELFSLDLSKTEEALTQAFHRSIGVRIKAEAEIIEGEVVEIS 60
Query: 572 XXXXXXXXXXXXXXXXXXXXXXXLTLKTTDMETNYDMGAKMIDSLLKEKVQAGDVITIDK 751
LTLKTTDMET ++G KMI++L KEK+Q+GD + +
Sbjct: 61 IDRPVSGGSSAPSGVAAAGKIGRLTLKTTDMETVDELGGKMIEALGKEKLQSGDGCGL-R 119
Query: 752 ATGKINKLGRSFARARDYDATGQQAXFVQCPEGXLQ 859
+ L A RDYDA Q V+CPEG LQ
Sbjct: 120 EGDQAWPLNWEVAGCRDYDAVCPQTKSVKCPEGELQ 155
>11_06_0725 - 26703701-26704669
Length = 322
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 154 TTKMASIAAAQVQEVRSITRIERIGAHSHIRGLGLDDSLEPRQVSQG 294
TT A+ AAA V E + + RI +S +G+G+ +S+ + G
Sbjct: 18 TTSAAAAAAAVVSETATGSMTMRIAGYSQTKGIGVGNSINSSKFHAG 64
>02_04_0114 +
19879468-19880671,19882007-19882179,19882265-19882605,
19882698-19882977,19883070-19883267,19883380-19883652
Length = 822
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 404 GKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQ 523
GKTAIA GLA+ + ++AG+ + L++ A TQ
Sbjct: 229 GKTAIAEGLARRVAAGDVPAALAGARVVELDVGSLVAGTQ 268
>12_01_0777 -
7095081-7096259,7096636-7096725,7096827-7096902,
7097150-7097367,7097502-7097717,7097922-7098107,
7098181-7098303,7098399-7098514,7099254-7099832,
7101485-7101517,7102485-7103679,7103732-7103797,
7104843-7104905,7105328-7105411
Length = 1407
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 404 GKTAIAMGLAQALGP-DTPFTSMAGSEIFSLEMSKTEALTQ 523
GKTAIA GLAQ + D P T + G ++ +L+M A T+
Sbjct: 790 GKTAIAEGLAQRISTGDVPET-IEGKKVITLDMGLLVAGTK 829
>03_02_0663 +
10256898-10258915,10259162-10259248,10259463-10259724,
10259802-10260111,10260535-10260645,10260861-10261090
Length = 1005
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -3
Query: 463 RKWCVRSQSLC*SHSDGSLXLYQADRPITLLVPLSYLLESSVR*LRRP 320
R VRS S+C H+ + + AD P+ +P++ LE ++ RP
Sbjct: 51 RSLSVRSASVCYPHAPSTSGAFVADSPLPCGLPVAAALEPALDACLRP 98
>06_03_1249 -
28688997-28689248,28689469-28689533,28690016-28690093,
28691480-28691824,28693314-28693510,28695601-28696601
Length = 645
Score = 28.3 bits (60), Expect = 8.6
Identities = 26/82 (31%), Positives = 38/82 (46%)
Frame = +1
Query: 166 ASIAAAQVQEVRSITRIERIGAHSHIRGLGLDDSLEPRQVSQGMVGQKMARKAAGVILQM 345
A+ AA VR +TR +RG+ LD PR V G++G + K+ ++ +
Sbjct: 418 AAAAAGPKIRVRGLTRRSEARGEEILRGVDLD---VPRGVVVGVIGPSGSGKST-LLRAL 473
Query: 346 IREGKIAGRAVLLAGQPGTGXD 411
R + A AVLL G G D
Sbjct: 474 NRLWEPAPGAVLLDGVDICGID 495
>04_04_0369 -
24745140-24745510,24746005-24746089,24746746-24746878,
24747764-24748584
Length = 469
Score = 28.3 bits (60), Expect = 8.6
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -2
Query: 875 PPPXXFAXH-PRDTGRTWPADX*HHSLWLWQNSCRACLFCL-SPCL 744
PPP A H PR ++ + S WL Q+S RACL L SPCL
Sbjct: 25 PPPNGAATHAPRRILFSFSPE----SQWLGQSSTRACLPPLRSPCL 66
>04_03_0784 -
19610370-19611548,19611830-19611919,19612001-19612076,
19612917-19613134,19613333-19613548,19613974-19614159,
19614242-19614364,19614456-19614571,19615126-19615588
Length = 888
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 404 GKTAIAMGLAQAL-GPDTPFTSMAGSEIFSLEMSKTEALTQ 523
GKTAIA GLAQ + D P T + G ++ +L+M A T+
Sbjct: 271 GKTAIAEGLAQRISNGDVPET-IEGKKVITLDMGLLVAGTK 310
>02_03_0202 +
16359539-16359763,16360113-16360193,16361362-16361600,
16361828-16362029,16362108-16362188,16362272-16362455,
16362625-16362791,16363020-16363802
Length = 653
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -3
Query: 700 INHFGSHVVVRLHVGGLE--GETADPGAAASRRTLHYHLDDL 581
I +G+H++V + VGG + P + S L HL+DL
Sbjct: 184 IKTYGTHIIVEMAVGGQDVICVKQSPSSTISSADLKLHLEDL 225
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,251,654
Number of Sequences: 37544
Number of extensions: 409685
Number of successful extensions: 1007
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -