Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_M13
         (888 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039052-8|AAF98631.1|  448|Caenorhabditis elegans Ruvb (recombi...   153   2e-37
Z81042-2|CAB02793.1|  458|Caenorhabditis elegans Hypothetical pr...    74   2e-13
AY323527-1|AAP78770.1|  563|Caenorhabditis elegans grainyhead tr...    29   5.9  
AC024797-1|AAF60703.3|  563|Caenorhabditis elegans Grainyhead (d...    29   5.9  

>AF039052-8|AAF98631.1|  448|Caenorhabditis elegans Ruvb
           (recombination protein) homologprotein 2 protein.
          Length = 448

 Score =  153 bits (370), Expect = 2e-37
 Identities = 75/161 (46%), Positives = 99/161 (61%)
 Frame = +2

Query: 404 GKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAIRXXXXXXXXXXXXXXXXX 583
           GKTAIA+ +++ LG DTPF S+  SEI+S E++KTEALTQA R                 
Sbjct: 78  GKTAIAIAISKELGEDTPFVSIVASEIYSNEINKTEALTQAFRRALGIQIKEETEVLEGE 137

Query: 584 XXXXXXXXXXXXXXXXXXXLTLKTTDMETNYDMGAKMIDSLLKEKVQAGDVITIDKATGK 763
                              LT++TTDMET YD+G+KM+D+ LKEKV  GDVI +DKA+G+
Sbjct: 138 VISLEVDRSANGMGPKVGKLTMRTTDMETIYDLGSKMVDACLKEKVMPGDVIQVDKASGR 197

Query: 764 INKLGRSFARARDYDATGQQAXFVQCPEGXLQXXKEVVHPV 886
           + +LGRSF R+ DYDA G +   VQCP+G +Q  +E VH V
Sbjct: 198 VTRLGRSFNRSHDYDAMGPKVKLVQCPDGEIQKRRETVHTV 238



 Score = 93.5 bits (222), Expect = 2e-19
 Identities = 43/70 (61%), Positives = 55/70 (78%)
 Frame = +1

Query: 196 VRSITRIERIGAHSHIRGLGLDDSLEPRQVSQGMVGQKMARKAAGVILQMIREGKIAGRA 375
           V+ I ++ER   HSHI GLGL+D LE   VS GMVGQ  AR+AAG+I++MI+EGKIAGRA
Sbjct: 9   VKDIVKVERTSVHSHITGLGLNDRLEAEYVSGGMVGQVAARQAAGLIVKMIQEGKIAGRA 68

Query: 376 VLLAGQPGTG 405
           +L+ G+PG G
Sbjct: 69  LLVTGEPGAG 78


>Z81042-2|CAB02793.1|  458|Caenorhabditis elegans Hypothetical
           protein C27H6.2 protein.
          Length = 458

 Score = 73.7 bits (173), Expect = 2e-13
 Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 4/165 (2%)
 Frame = +2

Query: 404 GKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAIRXXXXXXXXXXXXXXXXX 583
           GKTAIA+ ++Q LG   PF  +  SE+FS E+ KTE L ++ R                 
Sbjct: 94  GKTAIALAMSQELGDGVPFVPLVASEVFSNEVKKTEVLMRSFRRAIGLRVKETKDVYEGE 153

Query: 584 XXXXXXXXXXXXXXXXXXX----LTLKTTDMETNYDMGAKMIDSLLKEKVQAGDVITIDK 751
                                  L+LKT        +   + DS+LK++V+ GDVI I+ 
Sbjct: 154 VTELSPVEASDNSGMGKTISHLVLSLKTAKGSKQLKLDPSIYDSILKQRVEVGDVIYIEA 213

Query: 752 ATGKINKLGRSFARARDYDATGQQAXFVQCPEGXLQXXKEVVHPV 886
            +G + ++GR    A ++D    +  FV  P+G ++  K++V  V
Sbjct: 214 NSGIVKRVGRCDVYASEFDLEADE--FVPMPKGDVRKSKDIVQNV 256



 Score = 72.5 bits (170), Expect = 4e-13
 Identities = 38/82 (46%), Positives = 55/82 (67%), Gaps = 2/82 (2%)
 Frame = +1

Query: 166 ASIAAAQVQEVRSITR-IERIGAHSHIRGLGLD-DSLEPRQVSQGMVGQKMARKAAGVIL 339
           +S   A ++EV+   + I+RI AHSH++GLG+D ++ E    + G VGQ  AR AA +++
Sbjct: 13  SSSRLAPIEEVKPTPKQIKRIAAHSHVKGLGIDTETQEAHYEAAGFVGQAPARTAASIVV 72

Query: 340 QMIREGKIAGRAVLLAGQPGTG 405
            MIR   +AGRAVL+AG P TG
Sbjct: 73  DMIRLKCMAGRAVLIAGPPATG 94


>AY323527-1|AAP78770.1|  563|Caenorhabditis elegans grainyhead
           transcription factor protein.
          Length = 563

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 326 PESSYR*FEKVR*RDEQCYWPVSLVQGK-TAIAMGLAQALGPD 451
           P +S R    VR RDEQ Y P+ +V    + +A+ +A   G D
Sbjct: 458 PRTSERIMLYVRKRDEQIYQPLHVVPASLSGLALAIANKFGAD 500


>AC024797-1|AAF60703.3|  563|Caenorhabditis elegans Grainyhead
           (drosophila transcriptionfactor) homolog protein 1
           protein.
          Length = 563

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 326 PESSYR*FEKVR*RDEQCYWPVSLVQGK-TAIAMGLAQALGPD 451
           P +S R    VR RDEQ Y P+ +V    + +A+ +A   G D
Sbjct: 458 PRTSERIMLYVRKRDEQIYQPLHVVPASLSGLALAIANKFGAD 500


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,919,385
Number of Sequences: 27780
Number of extensions: 309519
Number of successful extensions: 681
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)