Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_M12
         (896 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0617 + 21256745-21256943,21257454-21257647,21257836-212580...    30   2.2  
08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165     30   2.9  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   6.6  
01_01_0433 + 3282195-3285185                                           29   6.6  
07_03_0697 + 20759176-20759817,20760592-20760708,20761422-207616...    28   8.8  

>12_02_0617 +
           21256745-21256943,21257454-21257647,21257836-21258042,
           21258115-21258232,21258325-21258401,21258513-21258692,
           21259312-21259356,21260309-21260413,21261115-21261261
          Length = 423

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 665 FPPGSSLVRSPVPTLPLTGYCPPSP 739
           F P S+  R P P LPL  + PP+P
Sbjct: 9   FSPSSNPARPPPPRLPLPRFLPPTP 33


>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
          Length = 430

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -2

Query: 676 SRGKRLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAT 557
           SRGK L+S  + R  PP   + + V+ + GGG  G  P T
Sbjct: 25  SRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +2

Query: 392 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 547
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>01_01_0433 + 3282195-3285185
          Length = 996

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 665 FPPGSSLVRSPVPTLPLTGYCPPSPSXLASXXSL 766
           FPP SSL++  V     +GY P S S L     L
Sbjct: 317 FPPNSSLIKLHVSGTKFSGYIPSSISNLTDLKEL 350


>07_03_0697 +
           20759176-20759817,20760592-20760708,20761422-20761696,
           20761906-20762068,20762293-20762421,20762989-20763713,
           20763853-20764081
          Length = 759

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 566 RFSIGSAPLDEHHKNRRSSQRWRNP 640
           RFS  SAP+D+H + RR      NP
Sbjct: 132 RFSSSSAPVDKHGRRRRKKGGRENP 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,133,262
Number of Sequences: 37544
Number of extensions: 379979
Number of successful extensions: 1181
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)