Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_M09
(877 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 31 0.28
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch... 27 4.6
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 26 6.1
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po... 26 6.1
SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|... 26 6.1
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|... 26 8.1
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 30.7 bits (66), Expect = 0.28
Identities = 25/80 (31%), Positives = 35/80 (43%)
Frame = -3
Query: 875 LNVSAFSVSHTALNISYH*XTVLTSSIPYFFFKLLXFQRAIYTHTVFIENTVC*NFTPLF 696
+N S S TALN S T +TSS + + T T +TV + TP+
Sbjct: 1122 VNTSTPITSSTALNTS----TPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPIT 1177
Query: 695 RRVLVLTQIPIKTDTTKNTA 636
+V T PI + T NT+
Sbjct: 1178 SSTVVNTSTPITSSTVVNTS 1197
Score = 29.5 bits (63), Expect = 0.66
Identities = 24/81 (29%), Positives = 37/81 (45%)
Frame = -3
Query: 875 LNVSAFSVSHTALNISYH*XTVLTSSIPYFFFKLLXFQRAIYTHTVFIENTVC*NFTPLF 696
+N S S TALN S T +TSS + A+ T T ++V + TP+
Sbjct: 1578 VNSSTPITSSTALNTS----TPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPIT 1633
Query: 695 RRVLVLTQIPIKTDTTKNTAP 633
++ + PI + T NT+P
Sbjct: 1634 SSTVLNSSTPITSSTALNTSP 1654
Score = 28.3 bits (60), Expect = 1.5
Identities = 24/80 (30%), Positives = 35/80 (43%)
Frame = -3
Query: 875 LNVSAFSVSHTALNISYH*XTVLTSSIPYFFFKLLXFQRAIYTHTVFIENTVC*NFTPLF 696
+N S S TALN S T +TSS + + T T +TV + TP+
Sbjct: 1686 VNSSTPITSSTALNTS----TPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPIT 1741
Query: 695 RRVLVLTQIPIKTDTTKNTA 636
+V + PI + T NT+
Sbjct: 1742 SSTVVNSSTPITSSTALNTS 1761
Score = 28.3 bits (60), Expect = 1.5
Identities = 24/80 (30%), Positives = 35/80 (43%)
Frame = -3
Query: 875 LNVSAFSVSHTALNISYH*XTVLTSSIPYFFFKLLXFQRAIYTHTVFIENTVC*NFTPLF 696
+N S S TALN S T +TSS + + T T ++V + TP+
Sbjct: 2298 VNSSTPITSSTALNTS----TPITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPIT 2353
Query: 695 RRVLVLTQIPIKTDTTKNTA 636
+V T PI + T NT+
Sbjct: 2354 SSTVVNTSTPITSSTALNTS 2373
Score = 28.3 bits (60), Expect = 1.5
Identities = 24/80 (30%), Positives = 35/80 (43%)
Frame = -3
Query: 875 LNVSAFSVSHTALNISYH*XTVLTSSIPYFFFKLLXFQRAIYTHTVFIENTVC*NFTPLF 696
+N S S TALN S T +TSS + + T T ++V + TP+
Sbjct: 2706 VNSSTPITSSTALNTS----TPITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPIT 2761
Query: 695 RRVLVLTQIPIKTDTTKNTA 636
+V T PI + T NT+
Sbjct: 2762 SSTVVNTSTPITSSTALNTS 2781
Score = 27.5 bits (58), Expect = 2.7
Identities = 23/80 (28%), Positives = 34/80 (42%)
Frame = -3
Query: 875 LNVSAFSVSHTALNISYH*XTVLTSSIPYFFFKLLXFQRAIYTHTVFIENTVC*NFTPLF 696
LN S S + LN S T +TSS + + + T +TV + TP+
Sbjct: 1302 LNTSTSITSSSVLNSS----TPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNSSTPIT 1357
Query: 695 RRVLVLTQIPIKTDTTKNTA 636
+V T PI + T NT+
Sbjct: 1358 SSTVVNTSTPITSSTVVNTS 1377
Score = 27.1 bits (57), Expect = 3.5
Identities = 24/80 (30%), Positives = 34/80 (42%)
Frame = -3
Query: 875 LNVSAFSVSHTALNISYH*XTVLTSSIPYFFFKLLXFQRAIYTHTVFIENTVC*NFTPLF 696
LN S S TALN S T +TSS + + + T +TV TP+
Sbjct: 438 LNSSTPITSSTALNTS----TPITSSSVLNSSTPITSSSVLNSSTPITSSTVVNTSTPIT 493
Query: 695 RRVLVLTQIPIKTDTTKNTA 636
+V + PI + T NT+
Sbjct: 494 SSTVVNSSTPITSSTALNTS 513
Score = 27.1 bits (57), Expect = 3.5
Identities = 23/80 (28%), Positives = 34/80 (42%)
Frame = -3
Query: 875 LNVSAFSVSHTALNISYH*XTVLTSSIPYFFFKLLXFQRAIYTHTVFIENTVC*NFTPLF 696
+N S S T +N S T +TSS + + T T +TV + TP+
Sbjct: 1434 VNSSTPITSSTVVNTS----TPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPIT 1489
Query: 695 RRVLVLTQIPIKTDTTKNTA 636
+V T PI + T NT+
Sbjct: 1490 SSTVVNTSTPITSSTVVNTS 1509
Score = 26.6 bits (56), Expect = 4.6
Identities = 23/80 (28%), Positives = 33/80 (41%)
Frame = -3
Query: 875 LNVSAFSVSHTALNISYH*XTVLTSSIPYFFFKLLXFQRAIYTHTVFIENTVC*NFTPLF 696
LN S S T +N S T +TSS + + T T +TV TP+
Sbjct: 1146 LNSSTPITSSTVVNTS----TPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNTSTPIT 1201
Query: 695 RRVLVLTQIPIKTDTTKNTA 636
+V + PI + T NT+
Sbjct: 1202 SSTVVNSSTPITSSTVLNTS 1221
Score = 26.6 bits (56), Expect = 4.6
Identities = 23/80 (28%), Positives = 33/80 (41%)
Frame = -3
Query: 875 LNVSAFSVSHTALNISYH*XTVLTSSIPYFFFKLLXFQRAIYTHTVFIENTVC*NFTPLF 696
LN S S T +N S T +TSS + + T T +TV TP+
Sbjct: 1458 LNSSTPITSSTVVNTS----TPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNTSTPIT 1513
Query: 695 RRVLVLTQIPIKTDTTKNTA 636
+V + PI + T NT+
Sbjct: 1514 SSTVVNSSTPITSSTVLNTS 1533
Score = 26.6 bits (56), Expect = 4.6
Identities = 23/80 (28%), Positives = 36/80 (45%)
Frame = -3
Query: 875 LNVSAFSVSHTALNISYH*XTVLTSSIPYFFFKLLXFQRAIYTHTVFIENTVC*NFTPLF 696
+N S S TALN S T +TSS + A+ T T ++V + TP+
Sbjct: 1842 VNSSTPITSSTALNTS----TPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPIT 1897
Query: 695 RRVLVLTQIPIKTDTTKNTA 636
++ + PI + T NT+
Sbjct: 1898 SSTVLNSSTPITSSTALNTS 1917
Score = 26.6 bits (56), Expect = 4.6
Identities = 23/80 (28%), Positives = 36/80 (45%)
Frame = -3
Query: 875 LNVSAFSVSHTALNISYH*XTVLTSSIPYFFFKLLXFQRAIYTHTVFIENTVC*NFTPLF 696
+N S S TALN S T +TSS + A+ T T ++V + TP+
Sbjct: 2034 VNSSTPITSSTALNTS----TPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPIT 2089
Query: 695 RRVLVLTQIPIKTDTTKNTA 636
++ + PI + T NT+
Sbjct: 2090 SSTVLNSSTPITSSTALNTS 2109
Score = 26.2 bits (55), Expect = 6.1
Identities = 23/80 (28%), Positives = 35/80 (43%)
Frame = -3
Query: 875 LNVSAFSVSHTALNISYH*XTVLTSSIPYFFFKLLXFQRAIYTHTVFIENTVC*NFTPLF 696
+N S S TALN S T +TSS + + + T ++V + TP+
Sbjct: 1062 VNSSTPITSSTALNTS----TPITSSSVLNSSTPITSSTVLNSSTPITSSSVLNSSTPIT 1117
Query: 695 RRVLVLTQIPIKTDTTKNTA 636
+V T PI + T NT+
Sbjct: 1118 SSTVVNTSTPITSSTALNTS 1137
Score = 26.2 bits (55), Expect = 6.1
Identities = 23/80 (28%), Positives = 33/80 (41%)
Frame = -3
Query: 875 LNVSAFSVSHTALNISYH*XTVLTSSIPYFFFKLLXFQRAIYTHTVFIENTVC*NFTPLF 696
LN S S T LN S T +TSS + + + T +TV TP+
Sbjct: 1626 LNSSTPITSSTVLNSS----TPITSSTALNTSPPITSSTVVNSSTPITSSTVVNTSTPIT 1681
Query: 695 RRVLVLTQIPIKTDTTKNTA 636
+V + PI + T NT+
Sbjct: 1682 SSTVVNSSTPITSSTALNTS 1701
Score = 26.2 bits (55), Expect = 6.1
Identities = 23/80 (28%), Positives = 35/80 (43%)
Frame = -3
Query: 875 LNVSAFSVSHTALNISYH*XTVLTSSIPYFFFKLLXFQRAIYTHTVFIENTVC*NFTPLF 696
LN S S T +N S T +TSS + A+ T T +TV + TP+
Sbjct: 3006 LNSSTPITSSTVVNTS----TPITSSTVVNSSTPITSSTALNTSTPITSSTVLNSSTPIT 3061
Query: 695 RRVLVLTQIPIKTDTTKNTA 636
++ + PI + T NT+
Sbjct: 3062 SSSVLNSSTPITSSTALNTS 3081
Score = 25.8 bits (54), Expect = 8.1
Identities = 22/80 (27%), Positives = 33/80 (41%)
Frame = -3
Query: 875 LNVSAFSVSHTALNISYH*XTVLTSSIPYFFFKLLXFQRAIYTHTVFIENTVC*NFTPLF 696
LN S S + LN S T +TSS + + + T +TV TP+
Sbjct: 1002 LNTSTPITSSSVLNSS----TAITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPIT 1057
Query: 695 RRVLVLTQIPIKTDTTKNTA 636
+V + PI + T NT+
Sbjct: 1058 SSTVVNSSTPITSSTALNTS 1077
Score = 25.8 bits (54), Expect = 8.1
Identities = 23/80 (28%), Positives = 35/80 (43%)
Frame = -3
Query: 875 LNVSAFSVSHTALNISYH*XTVLTSSIPYFFFKLLXFQRAIYTHTVFIENTVC*NFTPLF 696
LN S S T +N S T +TSS + A+ T T ++V + TP+
Sbjct: 2130 LNSSTPITSSTVVNSS----TPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPIT 2185
Query: 695 RRVLVLTQIPIKTDTTKNTA 636
+V + PI + T NT+
Sbjct: 2186 SSTVVNSSTPITSSTVVNTS 2205
Score = 25.8 bits (54), Expect = 8.1
Identities = 23/80 (28%), Positives = 34/80 (42%)
Frame = -3
Query: 875 LNVSAFSVSHTALNISYH*XTVLTSSIPYFFFKLLXFQRAIYTHTVFIENTVC*NFTPLF 696
LN S S + LN S T +TSS + + + T +TV TP+
Sbjct: 3234 LNSSTPITSSSVLNSS----TPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPIT 3289
Query: 695 RRVLVLTQIPIKTDTTKNTA 636
+V + PI + TT NT+
Sbjct: 3290 SSTVVNSSTPITSSTTLNTS 3309
Score = 25.8 bits (54), Expect = 8.1
Identities = 23/80 (28%), Positives = 35/80 (43%)
Frame = -3
Query: 875 LNVSAFSVSHTALNISYH*XTVLTSSIPYFFFKLLXFQRAIYTHTVFIENTVC*NFTPLF 696
LN S S + LN S T +TSS + A+ T T ++V + TP+
Sbjct: 3354 LNSSTPVTSSSVLNSS----TPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPIT 3409
Query: 695 RRVLVLTQIPIKTDTTKNTA 636
+V + PI + T NT+
Sbjct: 3410 SSTVVNSSTPITSSTALNTS 3429
>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 815
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/54 (24%), Positives = 24/54 (44%)
Frame = -3
Query: 713 NFTPLFRRVLVLTQIPIKTDTTKNTAPNCICKKYMYKDNQIIEPIDHLIAKYCQ 552
NF PLF +L + + NT + KKY + ++++ D+ + Q
Sbjct: 264 NFFPLFLSILCVGYYHHLLNNPSNTELQSLIKKYSFYSERLVKSADNFTIESIQ 317
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 586 SIIWLSLYMYFLQIQFGAVFFVVS-VLIGICVNT 684
+++ LSL Y L I FG +++S +++G VN+
Sbjct: 26 ALLVLSLIFYILYICFGTTSYILSGIILGAYVNS 59
>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 451
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 241 KVFNSPISLR-MEAKLKEYRALRRRKELVENTKEKIRKSKDKIVNF 375
K F++P + M+ +YR + R +EL+ EKIR S NF
Sbjct: 320 KRFSNPHTKHIMDLVRTQYRNVLRTRELIPEFLEKIRSSYSNNQNF 365
>SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +1
Query: 286 KEYRALRRRKELVE-NTKEKIRKSKDKIVN 372
+ + +R+ E +E N +K+RKS DK++N
Sbjct: 93 RTFLQIRKYLETIEENEFDKVRKSSDKLIN 122
>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
3|||Manual
Length = 368
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 544 KESWQYFAIKWSIGSIIWLSLYMYFLQIQFGAVFFVVSVLIGICV 678
K+ W YF + +I +I++SL+ YF + AV V + + C+
Sbjct: 134 KDEWVYFGVWCAICLMIFISLW-YFYETWIKAVKVTV-IFLAQCI 176
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,879,060
Number of Sequences: 5004
Number of extensions: 53390
Number of successful extensions: 216
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -