Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_M09
         (877 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97006-2|AAC47962.2|  144|Caenorhabditis elegans Hypothetical pr...    44   2e-04
Z68106-1|CAA92124.1|  516|Caenorhabditis elegans Hypothetical pr...    29   5.8  

>U97006-2|AAC47962.2|  144|Caenorhabditis elegans Hypothetical
           protein C13F10.5 protein.
          Length = 144

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 16/32 (50%), Positives = 26/32 (81%)
 Frame = +3

Query: 696 KKRGEVSAYSVFNENCVSIDGTLKXEQFEKEI 791
           ++RGE+SAYSVFN+NC  + G++  E FE+++
Sbjct: 108 RRRGEMSAYSVFNDNCERLAGSMTAEHFERDM 139



 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/64 (25%), Positives = 34/64 (53%)
 Frame = +1

Query: 541 PKESWQYFAIKWSIGSIIWLSLYMYFLQIQFGAVFFVVSVLIGICVNTRTRLKSGVKFQH 720
           P++  +   +   I  ++++        +QFGAVFF++S+++    NT  R + G    +
Sbjct: 58  PEDYEEQSVVSTRIAVVVYVVGQALAAWVQFGAVFFILSLILFTYWNTGRR-RRGEMSAY 116

Query: 721 TVFS 732
           +VF+
Sbjct: 117 SVFN 120


>Z68106-1|CAA92124.1|  516|Caenorhabditis elegans Hypothetical
           protein F41E7.1 protein.
          Length = 516

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +3

Query: 489 PE*YNFRSK*TGILRR*AERILAIFCN*MVNRLYYLVIFV 608
           P   NF+ K  G L+R  E ILAI C   V+ L+ +++F+
Sbjct: 198 PAMINFKEKQLGSLKRIPENILAICC---VDNLFCVILFM 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,627,394
Number of Sequences: 27780
Number of extensions: 290245
Number of successful extensions: 811
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)