Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_M08
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces p...    97   4e-21
SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3 |S...    63   6e-11
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac...    43   5e-05

>SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 161

 Score = 96.7 bits (230), Expect = 4e-21
 Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 2/105 (1%)
 Frame = +1

Query: 160 LTLPXASINKMXKXLVPSVRVAF--ESRELILNCCTEFIHLISSEANEVCNQSNKKTINA 333
           L+LP A++ KM   ++P V + F  E+R+L++ CC EFIHL+SSEANE+C +  KKTI A
Sbjct: 10  LSLPKATVQKMVSDILP-VDLTFTKEARDLLIECCVEFIHLVSSEANEICEKEAKKTIAA 68

Query: 334 EHVLTALDRLGFSDYTIEAEAVLKDCKAVAAKRRRQSTRLENLGI 468
           EH++ AL+ L F +Y  EA  V  + K     R ++S++ E  G+
Sbjct: 69  EHIIKALENLEFKEYIAEALEVAAEHKEQQKNREKKSSKFEQSGV 113


>SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 116

 Score = 62.9 bits (146), Expect = 6e-11
 Identities = 27/72 (37%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
 Frame = +1

Query: 166 LPXASINKMXKXLVP-SVRVAFESRELILNCCTEFIHLISSEANEVCNQSNKKTINAEHV 342
           LP A++ ++ K  +P + +++ E+++ + +C +EFI  ++ EA+E C Q  +KTI  E V
Sbjct: 12  LPIANVARIMKSALPENAKISKEAKDCVQDCVSEFISFVTGEASEQCTQEKRKTITGEDV 71

Query: 343 LTALDRLGFSDY 378
           L AL+ LGF +Y
Sbjct: 72  LLALNTLGFENY 83


>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 43.2 bits (97), Expect = 5e-05
 Identities = 20/75 (26%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
 Frame = +1

Query: 160 LTLPXASINKMXKXLVPSVR-VAFESRELILNCCTEFIHLISSEANEVCNQSNKKTINAE 336
           L LP + I ++ K ++P    V  E+ + ++N  T F+  ++S + E+   +N+K +  +
Sbjct: 15  LALPRSIIMRLVKGVLPEKSLVQKEALKAMINSATLFVSFLTSASGEIATNNNRKILMPQ 74

Query: 337 HVLTALDRLGFSDYT 381
            VL ALD + + +++
Sbjct: 75  DVLNALDEIEYPEFS 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,327,563
Number of Sequences: 5004
Number of extensions: 36089
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)