Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_M08
         (860 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81546-4|CAB04453.1|  184|Caenorhabditis elegans Hypothetical pr...    96   2e-20
AF025470-4|AAB71054.1|  403|Caenorhabditis elegans Hypothetical ...    62   7e-10
AF016452-17|AAB66021.1| 1152|Caenorhabditis elegans Hypothetical...    30   1.8  
Z47808-9|CAI46561.1|  425|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z47808-8|CAA87777.2| 1087|Caenorhabditis elegans Hypothetical pr...    29   3.2  

>Z81546-4|CAB04453.1|  184|Caenorhabditis elegans Hypothetical
           protein F53A2.5 protein.
          Length = 184

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 52/120 (43%), Positives = 71/120 (59%), Gaps = 2/120 (1%)
 Frame = +1

Query: 166 LPXASINKMXKXLVPSVRVAFESRELILNCCTEFIHLISSEANEVCNQSNKKTINAEHVL 345
           LP   IN++ K +VP +R+A ESR++I  CC EF+  I+ EA  + +Q  +KTI  EHV 
Sbjct: 22  LPQKGINQIIKEVVPEMRIANESRDMINACCVEFVKHIAREAQRIASQDQRKTIYHEHVQ 81

Query: 346 TALDRLGFS-DYTIEAEAVLKDCKAVAAKR-RRQSTRLENLGIPXXXXXXXXXXXFAKAR 519
            AL  LGF+ DY   A++VL  CK  A K+ RR+++RLE  GIP             KAR
Sbjct: 82  KALQNLGFTPDYLEAADSVLDACKVEAEKKLRRKNSRLEKCGIPEEKLYEMQQELIQKAR 141


>AF025470-4|AAB71054.1|  403|Caenorhabditis elegans Hypothetical
           protein W10D9.4 protein.
          Length = 403

 Score = 61.7 bits (143), Expect = 7e-10
 Identities = 28/72 (38%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
 Frame = +1

Query: 166 LPXASINKMXKXLV-PSVRVAFESRELILNCCTEFIHLISSEANEVCNQSNKKTINAEHV 342
           LP A++ ++ K  + P  ++A +++E    C +EFI  I+SEA E+CN + +KTI A+ +
Sbjct: 66  LPIANVVRIMKTQMDPQAKLAKDAKECAQECVSEFISFIASEAAEICNITKRKTITADDL 125

Query: 343 LTALDRLGFSDY 378
           LTA++  GF +Y
Sbjct: 126 LTAMEATGFDNY 137


>AF016452-17|AAB66021.1| 1152|Caenorhabditis elegans Hypothetical
           protein T05H4.3 protein.
          Length = 1152

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = +1

Query: 232 SRELILNCCTEFIHLISSEANEVC---NQSNKKTINAEHVLTALDRLGFSDYTIEAEAVL 402
           S E+I+  C+   ++  +E + +      SN+K  +   +   LDR    DYT  A  ++
Sbjct: 391 SYEIIVKSCSVLGNITKNETDRLFILEKDSNEKLFDLRTIFNLLDRFTRKDYTKHAVRLI 450

Query: 403 KDCKAVAAKRR 435
           +D + +  + +
Sbjct: 451 RDFEVIKKQEK 461


>Z47808-9|CAI46561.1|  425|Caenorhabditis elegans Hypothetical
           protein D2013.8b protein.
          Length = 425

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 241 LILNCCTEFIHLISSEANEVCNQSNKKTINAEHVLTALD 357
           +IL CC   I + S   N++     K TI A HV+   D
Sbjct: 138 VILGCCDGSIEIASISRNKLIGLYTKSTIGASHVVCRED 176


>Z47808-8|CAA87777.2| 1087|Caenorhabditis elegans Hypothetical
           protein D2013.8a protein.
          Length = 1087

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 241 LILNCCTEFIHLISSEANEVCNQSNKKTINAEHVLTALD 357
           +IL CC   I + S   N++     K TI A HV+   D
Sbjct: 800 VILGCCDGSIEIASISRNKLIGLYTKSTIGASHVVCRED 838


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,069,888
Number of Sequences: 27780
Number of extensions: 207932
Number of successful extensions: 519
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)