Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_M06
         (878 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0813 - 24853119-24854480,24854711-24855442,24855556-248559...    31   1.2  
05_03_0362 - 12973488-12974251,12975346-12975580,12976410-129767...    30   2.8  
02_01_0560 - 4117565-4118176,4118443-4118477,4118836-4118962           30   2.8  
11_06_0346 - 22549699-22549721,22549857-22549999,22550100-225521...    29   4.9  
03_03_0103 - 14442293-14442478,14442915-14442961,14443247-14443373     29   4.9  
09_03_0110 + 12432562-12432801,12432811-12433419                       28   8.6  
04_03_0133 - 11653859-11653962,11658466-11658979                       28   8.6  

>06_03_0813 -
           24853119-24854480,24854711-24855442,24855556-24855962,
           24856091-24856359,24856681-24856733,24857019-24857078,
           24857309-24857363,24858080-24858155,24858225-24858801
          Length = 1196

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 16/78 (20%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
 Frame = +2

Query: 284 HKGHESMHTTMVLILIGALVISQVVIVQWKKRHYRSYAFF----TMIAMWSIPVMISFKN 451
           H G+ S    + ++L+   ++S V+++ W K  + ++ F     T+ A++    +I F+ 
Sbjct: 358 HLGNASGLAVITVMLVTTCLMSLVIVLCWHKSIFLAFGFIIFFGTIEALYFSASLIKFRE 417

Query: 452 GWWRFVSIWSVFTLLTAL 505
           G W  + +  +F  +  +
Sbjct: 418 GAWVPIVLAFIFMAIMCI 435


>05_03_0362 -
           12973488-12974251,12975346-12975580,12976410-12976738,
           12977277-12977404,12977695-12977879,12977972-12978165,
           12978239-12978368,12978507-12978566,12979037-12979059,
           12979158-12979218,12979677-12979748,12979804-12979924,
           12980351-12980415,12980973-12981089,12981970-12982239
          Length = 917

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +2

Query: 470 SIWSVFTLLTALVIR--KSSIKPMSATTPRLVYKWFYLIYKVCCFVGVFGYILMMLTMLG 643
           S+ S F  L +  I+  +S + P +A   RL+ K+F +         V+G +  +LT +G
Sbjct: 415 SLHSTFLDLLSATIKGMRSQLLPHAANIVRLITKYFEIAKLSTMRTKVYGIVQQLLTSMG 474

Query: 644 VNL 652
           V +
Sbjct: 475 VGI 477


>02_01_0560 - 4117565-4118176,4118443-4118477,4118836-4118962
          Length = 257

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/26 (57%), Positives = 15/26 (57%)
 Frame = +3

Query: 798 AYRLGSWRATCAPCAGPRCWCPCTRR 875
           A R G W ATC P AG R   PC RR
Sbjct: 2   AVRGGVWIATCRPTAGGRA-TPCGRR 26


>11_06_0346 -
           22549699-22549721,22549857-22549999,22550100-22552175,
           22552305-22552822
          Length = 919

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +2

Query: 212 PNKTYQELTSEERLRYDHQKLHELHKGHESMHTTMVLILIGALVI---SQVVIVQW 370
           P K  +ELTS ERL   H K+ +L  G   +     L L G L+     Q+V ++W
Sbjct: 562 PEKV-KELTSLERLDISHTKISDLPSGVCRLPNLETLDLRGTLISQLPDQIVRIKW 616


>03_03_0103 - 14442293-14442478,14442915-14442961,14443247-14443373
          Length = 119

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = +3

Query: 798 AYRLGSWRATCAPCAGPRCWCPCTRR 875
           A R G W  TC P AG R   PC RR
Sbjct: 2   AVRGGVWTTTCRPTAGGRA-TPCGRR 26


>09_03_0110 + 12432562-12432801,12432811-12433419
          Length = 282

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 795 RAYRLGSWRATCAPCAGPRCWCPCTRR 875
           RA++   W +T  PC+  + W PC+RR
Sbjct: 193 RAHKALGW-STGDPCSPSKAWRPCSRR 218


>04_03_0133 - 11653859-11653962,11658466-11658979
          Length = 205

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 224 YQEL-TSEERLRYDHQKLHELHKGHESMHTTMVLILIG 334
           Y+EL TS ERL   H+KL E H    S      LI +G
Sbjct: 21  YEELKTSHERLTISHEKLKEAHDNLLSTTQHEALIDVG 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,920,701
Number of Sequences: 37544
Number of extensions: 441559
Number of successful extensions: 1138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)