Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_M06
(878 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46787-5|CAA86743.1| 409|Caenorhabditis elegans Hypothetical pr... 226 1e-59
AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin syntha... 32 0.62
AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin syntha... 32 0.62
Z32679-2|CAA83592.1| 385|Caenorhabditis elegans Hypothetical pr... 31 1.1
AL117207-21|CAN99696.1| 255|Caenorhabditis elegans Hypothetical... 31 1.1
AL117207-20|CAB60403.3| 228|Caenorhabditis elegans Hypothetical... 31 1.1
Z83123-6|CAD45601.1| 327|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z75552-3|CAA99940.1| 465|Caenorhabditis elegans Hypothetical pr... 29 5.8
AC006744-1|AAF60506.2| 328|Caenorhabditis elegans Serpentine re... 28 7.7
>Z46787-5|CAA86743.1| 409|Caenorhabditis elegans Hypothetical
protein C16C10.5 protein.
Length = 409
Score = 226 bits (553), Expect = 1e-59
Identities = 95/208 (45%), Positives = 143/208 (68%)
Frame = +2
Query: 230 ELTSEERLRYDHQKLHELHKGHESMHTTMVLILIGALVISQVVIVQWKKRHYRSYAFFTM 409
ELT EE+ +H+K+HE HKGHE+MH M++I + ++++ Q+ +V WK++H++SY T+
Sbjct: 96 ELTEEEQWAEEHRKMHEKHKGHEAMHMEMMVIFMISVIVGQIFLVTWKRKHFKSYQMCTL 155
Query: 410 IAMWSIPVMISFKNGWWRFVSIWSVFTLLTALVIRKSSIKPMSATTPRLVYKWFYLIYKV 589
I M +IPV + F W+RF++ W VF + +A + K+S + +S TPR VYKWF ++K+
Sbjct: 156 IGMLTIPVYVCFNRSWYRFLATWLVFCIFSAFIWLKASAQHISGGTPRFVYKWFLFLHKL 215
Query: 590 CCFVGVFGYILMMLTMLGVNLMFGQKPQVWMDIAILFLFNGLYFGVLGRDVAEYCTDQMA 769
+GV GY++MM +LG +++FG MD ILF+F G+Y+GVLGRD A CT +MA
Sbjct: 216 SYVLGVVGYLIMMGALLGFHVLFGVSQPTLMDAGILFMFYGVYYGVLGRDFAHICTARMA 275
Query: 770 ASIGFYTKEGIPTRQLESDVCAVCXAPL 853
+ IG+YT EG+P + LE VCAVC L
Sbjct: 276 SRIGYYTPEGLPKKHLEDGVCAVCGGRL 303
>AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin synthase
2 protein.
Length = 1668
Score = 31.9 bits (69), Expect = 0.62
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +2
Query: 422 SIPVMISFKN-GWWR-FVSIWSVFTLLTALVIRKSSIKPMSATTPRLVYKWFYLIYKVCC 595
+IPV ++ + WW+ FV SVF + L + + T V W IY VCC
Sbjct: 305 AIPVSLTLISLAWWQNFVHRDSVFPPVRTLAKFAQRLSERRSKTYAFVSLWKICIYVVCC 364
Query: 596 FV 601
F+
Sbjct: 365 FL 366
>AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin synthase
protein 2 protein.
Length = 1668
Score = 31.9 bits (69), Expect = 0.62
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +2
Query: 422 SIPVMISFKN-GWWR-FVSIWSVFTLLTALVIRKSSIKPMSATTPRLVYKWFYLIYKVCC 595
+IPV ++ + WW+ FV SVF + L + + T V W IY VCC
Sbjct: 305 AIPVSLTLISLAWWQNFVHRDSVFPPVRTLAKFAQRLSERRSKTYAFVSLWKICIYVVCC 364
Query: 596 FV 601
F+
Sbjct: 365 FL 366
>Z32679-2|CAA83592.1| 385|Caenorhabditis elegans Hypothetical
protein C05B5.2 protein.
Length = 385
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Frame = +2
Query: 392 YAFFTMIAMWSIPVMISFKNGWWRFVSIWSVFTLLTALV-IRKSSIKPMS----ATTPRL 556
+ FF + IP I + G + ++S F L + + S+K + A T +
Sbjct: 213 FLFFIAFRAFIIPKFIFLETGSYVATGLFSAFHLTILWIHMNPKSLKSLYYAYIALTVLM 272
Query: 557 VYKWFYLIYKVCCFVGVFGYILMM 628
+ WF +++ CF+ +G+++ M
Sbjct: 273 LTGWFDFVFRKHCFLKKYGFLVAM 296
>AL117207-21|CAN99696.1| 255|Caenorhabditis elegans Hypothetical
protein Y60A3A.19b protein.
Length = 255
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +2
Query: 428 PVMISFK---NGWWRFVSIWSVFTLLTALVIRK-SSIKPMSATTPRLVYKWFYLIY 583
P+ SF+ NG F +IWSV++ T L + + + KP+ L+Y +FY +Y
Sbjct: 197 PLFSSFRLLSNGLGMFGTIWSVYSAGTLLCVDELQAKKPLVVYPVFLLYIYFYSLY 252
>AL117207-20|CAB60403.3| 228|Caenorhabditis elegans Hypothetical
protein Y60A3A.19a protein.
Length = 228
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +2
Query: 428 PVMISFK---NGWWRFVSIWSVFTLLTALVIRK-SSIKPMSATTPRLVYKWFYLIY 583
P+ SF+ NG F +IWSV++ T L + + + KP+ L+Y +FY +Y
Sbjct: 170 PLFSSFRLLSNGLGMFGTIWSVYSAGTLLCVDELQAKKPLVVYPVFLLYIYFYSLY 225
>Z83123-6|CAD45601.1| 327|Caenorhabditis elegans Hypothetical
protein T04A11.12 protein.
Length = 327
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/74 (21%), Positives = 32/74 (43%)
Frame = -3
Query: 513 LMTRAVRSVNTLQIETNLHQPFLKLIMTGMDHMAIIVKKAYDL*CRFFHWTMTTCEITSA 334
L+ RS+++ ++E +L +I + + + I++ C FF W T+ I
Sbjct: 238 LLNAQTRSMHSYKVEVSLSLTTFSMIFSYLSNAMIVI-------CSFFFWNYTSLAIMLR 290
Query: 333 PINIKTIVVCIDSW 292
P + C+ W
Sbjct: 291 PFG-NDLDTCVAPW 303
>Z75552-3|CAA99940.1| 465|Caenorhabditis elegans Hypothetical
protein W04D2.3 protein.
Length = 465
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 566 WFYLIYKVCCFVGVFGYILMMLTMLGVN 649
W YL KV F+ VF + +M LG N
Sbjct: 200 WIYLFTKVLYFLNVFAQLYLMNYFLGTN 227
>AC006744-1|AAF60506.2| 328|Caenorhabditis elegans Serpentine
receptor, class t protein52 protein.
Length = 328
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +3
Query: 705 LTACTSEY*GGMLLNIALIKWQHPSGSTRRRAYRLGSWRATCA 833
LT CT+ G LL + + +P + LG W ++CA
Sbjct: 82 LTTCTATILSGYLLTVGAVFCTYPELIYVAGCFALGGWVSSCA 124
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,055,791
Number of Sequences: 27780
Number of extensions: 401339
Number of successful extensions: 1086
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -