Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_M05
(869 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 56 5e-09
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 56 9e-09
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 54 2e-08
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 54 2e-08
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 53 6e-08
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 44 2e-05
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 41 2e-04
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 40 6e-04
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 39 0.001
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 38 0.001
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 33 0.053
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 28 1.5
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |... 28 2.0
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 27 2.6
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 27 3.5
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 4.6
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 27 4.6
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr... 26 8.0
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 26 8.0
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 8.0
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 26 8.0
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 56.4 bits (130), Expect = 5e-09
Identities = 24/45 (53%), Positives = 30/45 (66%)
Frame = +2
Query: 647 RFEASPHYIKNGEMRDYQVRGLNWMISLYENGINGILADENGSXK 781
+ E P YIK GE+RD+Q+ G+NWM L+ NGILADE G K
Sbjct: 377 KLEKQPSYIKGGEIRDFQLTGINWMAYLWHRNENGILADEMGLGK 421
Score = 35.5 bits (78), Expect = 0.010
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 768 MGLXKTLQTISLLGYMKHXKNVPGPHIXIVPKS 866
MGL KT+QT+ L Y+ H GP + +VP S
Sbjct: 417 MGLGKTVQTVCFLSYLVHSLKQHGPFLIVVPLS 449
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 55.6 bits (128), Expect = 9e-09
Identities = 23/40 (57%), Positives = 30/40 (75%)
Frame = +2
Query: 662 PHYIKNGEMRDYQVRGLNWMISLYENGINGILADENGSXK 781
P + G++++YQ+RGL WMISLY N +NGILADE G K
Sbjct: 409 PSILVGGKLKEYQLRGLQWMISLYNNHLNGILADEMGLGK 448
Score = 35.9 bits (79), Expect = 0.007
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = +3
Query: 768 MGLXKTLQTISLLGYMKHXKNVPGPHIXIVPKS 866
MGL KT+QTISL+ ++ K GP + IVP S
Sbjct: 444 MGLGKTIQTISLITHLIEKKRQNGPFLVIVPLS 476
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 54.4 bits (125), Expect = 2e-08
Identities = 22/40 (55%), Positives = 28/40 (70%)
Frame = +2
Query: 662 PHYIKNGEMRDYQVRGLNWMISLYENGINGILADENGSXK 781
P G ++DYQ++GL WM+SLY N +NGILADE G K
Sbjct: 861 PKIFVGGTLKDYQLKGLEWMLSLYNNNLNGILADEMGLGK 900
Score = 37.9 bits (84), Expect = 0.002
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = +3
Query: 768 MGLXKTLQTISLLGYMKHXKNVPGPHIXIVPKS 866
MGL KT+QTI+ + Y+ KN GP + IVP S
Sbjct: 896 MGLGKTIQTIAFITYLIEKKNQQGPFLIIVPLS 928
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 54.4 bits (125), Expect = 2e-08
Identities = 26/53 (49%), Positives = 33/53 (62%)
Frame = +2
Query: 623 NSKQKTIFRFEASPHYIKNGEMRDYQVRGLNWMISLYENGINGILADENGSXK 781
NS+ K + E P YI GE+RD+Q+ G+NWM L+ NGILADE G K
Sbjct: 355 NSRPK-YRKLEQQPSYITGGELRDFQLTGVNWMAYLWHKNENGILADEMGLGK 406
Score = 36.7 bits (81), Expect = 0.004
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 768 MGLXKTLQTISLLGYMKHXKNVPGPHIXIVPKS 866
MGL KT+QT++ L Y+ H GP + +VP S
Sbjct: 402 MGLGKTVQTVAFLSYLAHSLRQHGPFLVVVPLS 434
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 52.8 bits (121), Expect = 6e-08
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Frame = +2
Query: 617 ETNSKQKTIFR-FEASPHYIKNGEMRDYQVRGLNWMISLYENGINGILADENGSXK 781
E N + T+ FE + ++++YQ++GLNW+ +LYE GINGILADE G K
Sbjct: 818 EMNFQNPTLVNAFEVKQPKMLMCKLKEYQLKGLNWLANLYEQGINGILADEMGLGK 873
Score = 36.3 bits (80), Expect = 0.006
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +3
Query: 768 MGLXKTLQTISLLGYMKHXKNVPGPHIXIVPKS 866
MGL KT+Q+IS++ Y+ N+ GP + I P S
Sbjct: 869 MGLGKTVQSISVMAYLAETHNIWGPFLVIAPAS 901
Score = 29.1 bits (62), Expect = 0.86
Identities = 9/19 (47%), Positives = 17/19 (89%)
Frame = +2
Query: 416 RSKRFDFLLKQTEIFSHFM 472
++++ DFL+ QTE++SHF+
Sbjct: 727 QARKLDFLITQTELYSHFV 745
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +2
Query: 668 YIKNGEMRDYQVRGLNWMISLYENGINGILADENGSXKNFANNFSTGIYETFXKRSWSSH 847
++ G +R+YQ GL W+ +L+++ NGILADE G K + + K +W H
Sbjct: 441 FLFRGTLREYQQYGLEWLTALHDSNTNGILADEMGLGKTI-QTIALLAHLACEKENWGPH 499
Score = 39.1 bits (87), Expect = 8e-04
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = +3
Query: 768 MGLXKTLQTISLLGYMKHXKNVPGPHIXIVPKSL 869
MGL KT+QTI+LL ++ K GPH+ IVP S+
Sbjct: 474 MGLGKTIQTIALLAHLACEKENWGPHLIIVPTSV 507
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 41.1 bits (92), Expect = 2e-04
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +2
Query: 683 EMRDYQVRGLNWMISLYENGINGILADENGSXK 781
+++DYQ+ G+NW+ LYE + GILADE G K
Sbjct: 386 KLQDYQIIGINWLYLLYELKLAGILADEMGLGK 418
Score = 33.9 bits (74), Expect = 0.030
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 768 MGLXKTLQTISLLGYMKHXKNVPGPHIXIVPKS 866
MGL KT QTI+ + KN+ GPH+ I P S
Sbjct: 414 MGLGKTCQTIAFFSLLMD-KNINGPHLVIAPAS 445
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 39.5 bits (88), Expect = 6e-04
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +2
Query: 662 PHYIKNG-EMRDYQVRGLNWMISLYENGINGILADENGSXK 781
P I +G ++ YQ+ GLNW+ +Y+ ++GILADE G K
Sbjct: 405 PSSIASGITLKSYQIVGLNWLCLMYKAKLSGILADEMGLGK 445
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 38.7 bits (86), Expect = 0.001
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = +2
Query: 683 EMRDYQVRGLNWMISLYENGINGILADENGSXK 781
+++ YQ+ G+NW+ LY+ ++GILADE G K
Sbjct: 549 QLKSYQLVGVNWLHLLYQQKLSGILADEMGLGK 581
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +2
Query: 638 TIFRFEASPHYIKNGEMRDYQVRGLNWMISLYENGINGILADENGSXK 781
T + + P +IK G + YQ++GLNW+ + ILADE G K
Sbjct: 540 TNLEWHSQPSFIKGGTLMPYQLKGLNWLYLRWYTHHPCILADEMGLGK 587
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 33.1 bits (72), Expect = 0.053
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 677 NGEMRDYQVRGLNWMISLYENGINGILADENGSXK 781
+ ++R YQ G+NW+ L + ++GIL D+ G K
Sbjct: 1355 SADLRKYQQEGVNWLAFLNKYELHGILCDDMGLGK 1389
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 768 MGLXKTLQTISLLGYMKHXKNVPGPHIXIVPKSL 869
MGL KT+Q +S L + H P + + P +L
Sbjct: 304 MGLGKTIQIVSFLSSLHHSGKFQKPALIVCPATL 337
Score = 27.5 bits (58), Expect = 2.6
Identities = 21/72 (29%), Positives = 32/72 (44%)
Frame = +2
Query: 566 DHRHRKTEQEEDGELLAETNSKQKTIFRFEASPHYIKNGEMRDYQVRGLNWMISLYENGI 745
+++ R + +D LL + K +T P I+ R YQV + W+ LY
Sbjct: 238 NNKDRGEFEGKDEWLLPHPSKKGQTFEGGFTIPGDIRPHLFR-YQVTCVQWLWELYCQEA 296
Query: 746 NGILADENGSXK 781
GI+ DE G K
Sbjct: 297 GGIIGDEMGLGK 308
>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 578 RKTEQEEDGELLAETNSKQKTIFRFEASPHYIKNGEMRDYQVRGLNWMI 724
+K E ++ E SKQK + R S + GEM ++ GL+ M+
Sbjct: 311 KKLESKQPMATRFEITSKQKVLCRLLLSKSRYRTGEMMMIELEGLDAMV 359
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 542 DTEPDGPGDHRHRKTEQEEDGELLAETNSKQKT 640
D+E D +TE EED E+ E+ S+ ++
Sbjct: 80 DSESDSESSEEEEETESEEDSEVSDESESESES 112
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -3
Query: 432 SNLLERSVSILLSKSPSFPLEDVVSLEEPLELSPISATSMASS 304
SN ++ S I L++SPS P+E +S ++L I S SS
Sbjct: 6 SNGIDESSVIDLTRSPSPPVETSISSTNIIDLDAIPDDSFPSS 48
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 342 PMALQVTRHLQEGKKVISRVRLKL 413
P ++ V R E KK++SR+R KL
Sbjct: 130 PESIDVARFSSEEKKILSRIRRKL 153
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 549 NLMVLEITDIEKLSKKKMENFWQKQIQNKRQYLDLKHLHI 668
N+ + + T IE SKKK Q Q++ + ++L+ K HI
Sbjct: 275 NVKLCQKTSIET-SKKKDSELSQSQLRKREKHLEQKIFHI 313
>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 431
Score = 25.8 bits (54), Expect = 8.0
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -1
Query: 446 ALVENRISWNDQFQSYSRNHLLSLL 372
A + + IS ND+ +S+S N LLS+L
Sbjct: 171 ASMGDAISTNDELESWSNNLLLSML 195
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 8.0
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = -3
Query: 462 ENISV--CFSRKSNLLERSVSILLSKSPSFPLEDVV-SLEEPLELSPISATSMASS 304
ENIS + ++ + +++++ P P+ + +L EP+ LSP S+T +S
Sbjct: 189 ENISANAIHVNQDKVIRSANNLIINSQPILPVRSFLDALGEPIYLSPTSSTYFLNS 244
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 416 RSKRFDFLLKQTEIFSHFMTN 478
R K+F+ L +++E FSH M N
Sbjct: 164 RQKKFNLLREESEGFSHLMIN 184
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +1
Query: 433 FSTKANGDIFSFYDQHSKI--WWESSKTKGWQTQKD 534
FST+ + D +++ + + W E+S + WQ +KD
Sbjct: 1170 FSTQGHKDKDNYFQNYQLLLNWLENSDPRVWQIKKD 1205
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,433,362
Number of Sequences: 5004
Number of extensions: 71291
Number of successful extensions: 257
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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