Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_M05
(869 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00032-5|AAA50636.2| 1009|Caenorhabditis elegans Yeast isw (imit... 111 5e-25
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 52 5e-07
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 52 5e-07
Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical pr... 50 2e-06
Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical pr... 50 2e-06
AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-lik... 50 2e-06
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p... 48 7e-06
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ... 47 2e-05
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein. 47 2e-05
Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr... 46 5e-05
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 43 2e-04
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 43 2e-04
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 43 2e-04
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a... 40 0.002
Z49128-8|CAA88960.2| 989|Caenorhabditis elegans Hypothetical pr... 38 0.012
AL021171-6|CAA15960.2| 989|Caenorhabditis elegans Hypothetical ... 38 0.012
Z82079-1|CAB04949.1| 1529|Caenorhabditis elegans Hypothetical pr... 35 0.066
Z80344-7|CAB02491.1| 1529|Caenorhabditis elegans Hypothetical pr... 35 0.066
U32275-1|AAA75370.1| 982|Caenorhabditis elegans serine-threonin... 30 1.9
U11280-5|AAA19437.1| 982|Caenorhabditis elegans Protein kinase ... 30 1.9
Z48334-4|CAB61010.2| 426|Caenorhabditis elegans Hypothetical pr... 29 3.3
AF143297-1|AAD33902.1| 426|Caenorhabditis elegans tubby homolog... 29 3.3
Z66519-14|CAA91377.2| 1146|Caenorhabditis elegans Hypothetical p... 29 5.7
U56101-1|AAC47459.1| 1167|Caenorhabditis elegans AGE-1 protein. 29 5.7
AL110499-5|CAB57914.1| 1146|Caenorhabditis elegans Hypothetical ... 29 5.7
AF040659-3|AAK39392.1| 919|Caenorhabditis elegans Hypothetical ... 29 5.7
AF040659-2|AAK39393.1| 873|Caenorhabditis elegans Hypothetical ... 29 5.7
AF022969-4|AAB69889.1| 202|Caenorhabditis elegans Hypothetical ... 28 7.5
Z48334-6|CAA88313.1| 655|Caenorhabditis elegans Hypothetical pr... 28 10.0
AF314467-1|AAG41979.1| 655|Caenorhabditis elegans APC6 protein. 28 10.0
>U00032-5|AAA50636.2| 1009|Caenorhabditis elegans Yeast isw
(imitation swi) homologprotein 1 protein.
Length = 1009
Score = 111 bits (268), Expect = 5e-25
Identities = 67/151 (44%), Positives = 80/151 (52%)
Frame = +2
Query: 395 ESKIETDRSKRFDFLLKQTEIFSHFMTNTXXXXXXXXXXXXXXXXXXXXDTEPDGPGDHR 574
ES D KRF+ LL++TE FSH +++ DG DHR
Sbjct: 38 ESSDAADSFKRFERLLQKTENFSHCLSSGDAKLATGAPVDTKKRGRPSKKNGIDG--DHR 95
Query: 575 HRKTEQEEDGELLAETNSKQKTIFRFEASPHYIKNGEMRDYQVRGLNWMISLYENGINGI 754
HRKTEQEED E++A+ K + F+ SP YI+NGEMRDYQVRGLNW+ SL N INGI
Sbjct: 96 HRKTEQEEDEEMVADA-IKSDDLVIFDKSPFYIENGEMRDYQVRGLNWLASLQHNKINGI 154
Query: 755 LADENGSXKNFANNFSTGIYETFXKRSWSSH 847
LADE G K G Y K S H
Sbjct: 155 LADEMGLGKTLQTISMIG-YMKHYKNKASPH 184
Score = 55.6 bits (128), Expect = 4e-08
Identities = 24/33 (72%), Positives = 27/33 (81%)
Frame = +3
Query: 768 MGLXKTLQTISLLGYMKHXKNVPGPHIXIVPKS 866
MGL KTLQTIS++GYMKH KN PH+ IVPKS
Sbjct: 159 MGLGKTLQTISMIGYMKHYKNKASPHLVIVPKS 191
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 52.0 bits (119), Expect = 5e-07
Identities = 20/38 (52%), Positives = 30/38 (78%)
Frame = +2
Query: 668 YIKNGEMRDYQVRGLNWMISLYENGINGILADENGSXK 781
++ G++R+YQ+ GL+WM++LYE +NGILADE G K
Sbjct: 552 FLIRGQLREYQMVGLDWMVTLYEKNLNGILADEMGLGK 589
Score = 42.3 bits (95), Expect = 4e-04
Identities = 18/34 (52%), Positives = 26/34 (76%)
Frame = +3
Query: 768 MGLXKTLQTISLLGYMKHXKNVPGPHIXIVPKSL 869
MGL KT+QTISLL +M +++ GPH+ +VP S+
Sbjct: 585 MGLGKTIQTISLLAHMACSESIWGPHLIVVPTSV 618
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 52.0 bits (119), Expect = 5e-07
Identities = 20/38 (52%), Positives = 30/38 (78%)
Frame = +2
Query: 668 YIKNGEMRDYQVRGLNWMISLYENGINGILADENGSXK 781
++ G++R+YQ+ GL+WM++LYE +NGILADE G K
Sbjct: 552 FLIRGQLREYQMVGLDWMVTLYEKNLNGILADEMGLGK 589
Score = 42.3 bits (95), Expect = 4e-04
Identities = 18/34 (52%), Positives = 26/34 (76%)
Frame = +3
Query: 768 MGLXKTLQTISLLGYMKHXKNVPGPHIXIVPKSL 869
MGL KT+QTISLL +M +++ GPH+ +VP S+
Sbjct: 585 MGLGKTIQTISLLAHMACSESIWGPHLIVVPTSV 618
>Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical
protein F01G4.1 protein.
Length = 1474
Score = 50.4 bits (115), Expect = 2e-06
Identities = 25/72 (34%), Positives = 38/72 (52%)
Frame = +2
Query: 566 DHRHRKTEQEEDGELLAETNSKQKTIFRFEASPHYIKNGEMRDYQVRGLNWMISLYENGI 745
D +KT+++ K+K + + N ++ YQ++GL WM+SLY N +
Sbjct: 493 DEYDQKTKKQMADYYATAHKIKEKVVKQHTTMGGGDPNLLLKPYQIKGLEWMVSLYNNNL 552
Query: 746 NGILADENGSXK 781
NGILADE G K
Sbjct: 553 NGILADEMGLGK 564
Score = 39.1 bits (87), Expect = 0.004
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = +3
Query: 768 MGLXKTLQTISLLGYMKHXKNVPGPHIXIVPKS 866
MGL KT+QTISL+ Y+ K GP++ IVP S
Sbjct: 560 MGLGKTIQTISLVTYLMEVKQNNGPYLVIVPLS 592
>Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical
protein F01G4.1 protein.
Length = 1474
Score = 50.4 bits (115), Expect = 2e-06
Identities = 25/72 (34%), Positives = 38/72 (52%)
Frame = +2
Query: 566 DHRHRKTEQEEDGELLAETNSKQKTIFRFEASPHYIKNGEMRDYQVRGLNWMISLYENGI 745
D +KT+++ K+K + + N ++ YQ++GL WM+SLY N +
Sbjct: 493 DEYDQKTKKQMADYYATAHKIKEKVVKQHTTMGGGDPNLLLKPYQIKGLEWMVSLYNNNL 552
Query: 746 NGILADENGSXK 781
NGILADE G K
Sbjct: 553 NGILADEMGLGK 564
Score = 39.1 bits (87), Expect = 0.004
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = +3
Query: 768 MGLXKTLQTISLLGYMKHXKNVPGPHIXIVPKS 866
MGL KT+QTISL+ Y+ K GP++ IVP S
Sbjct: 560 MGLGKTIQTISLVTYLMEVKQNNGPYLVIVPLS 592
>AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-like
protein protein.
Length = 1474
Score = 50.4 bits (115), Expect = 2e-06
Identities = 25/72 (34%), Positives = 38/72 (52%)
Frame = +2
Query: 566 DHRHRKTEQEEDGELLAETNSKQKTIFRFEASPHYIKNGEMRDYQVRGLNWMISLYENGI 745
D +KT+++ K+K + + N ++ YQ++GL WM+SLY N +
Sbjct: 493 DEYDQKTKKQMADYYATAHKIKEKVVKQHTTMGGGDPNLLLKPYQIKGLEWMVSLYNNNL 552
Query: 746 NGILADENGSXK 781
NGILADE G K
Sbjct: 553 NGILADEMGLGK 564
Score = 39.1 bits (87), Expect = 0.004
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = +3
Query: 768 MGLXKTLQTISLLGYMKHXKNVPGPHIXIVPKS 866
MGL KT+QTISL+ Y+ K GP++ IVP S
Sbjct: 560 MGLGKTIQTISLVTYLMEVKQNNGPYLVIVPLS 592
>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
protein C52B9.8 protein.
Length = 1336
Score = 48.4 bits (110), Expect = 7e-06
Identities = 18/33 (54%), Positives = 26/33 (78%)
Frame = +2
Query: 683 EMRDYQVRGLNWMISLYENGINGILADENGSXK 781
+++ YQ++GL WM+SL+ N +NGILADE G K
Sbjct: 365 KLKPYQIKGLEWMVSLFNNNLNGILADEMGLGK 397
Score = 37.1 bits (82), Expect = 0.016
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +3
Query: 768 MGLXKTLQTISLLGYMKHXKNVPGPHIXIVPKS 866
MGL KT+QTI+ + Y+ K GP + IVP S
Sbjct: 393 MGLGKTIQTIAFITYLMEIKKTSGPFLVIVPLS 425
>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
protein.
Length = 1829
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +2
Query: 569 HRHRKTEQEEDGELLAETNSKQKTIFRFEASPHYIKN--GEMRDYQVRGLNWMISLYENG 742
HR K ++ E + K ++E P Y+ G++ YQ+ GLNW+ + NG
Sbjct: 561 HREAKGLPPKEDEKKKKKREKIDIRKKYEVQPDYVTETGGKLHPYQLEGLNWLRHCWSNG 620
Query: 743 INGILADENGSXK 781
+ ILADE G K
Sbjct: 621 TDAILADEMGLGK 633
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/84 (25%), Positives = 40/84 (47%)
Frame = +3
Query: 615 QKQIQNKRQYLDLKHLHIT*KMEKCGIIKLEGLTG*YHCMKMVLMEFWLMRMGLXKTLQT 794
+++I +++Y +++ ++T K +LEGL HC MGL KT+Q+
Sbjct: 579 REKIDIRKKY-EVQPDYVTETGGKLHPYQLEGLNWLRHCWSNGTDAILADEMGLGKTVQS 637
Query: 795 ISLLGYMKHXKNVPGPHIXIVPKS 866
++ L + + GP + P S
Sbjct: 638 LTFLYSLMKEGHCKGPFLIAAPLS 661
>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
Length = 1829
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +2
Query: 569 HRHRKTEQEEDGELLAETNSKQKTIFRFEASPHYIKN--GEMRDYQVRGLNWMISLYENG 742
HR K ++ E + K ++E P Y+ G++ YQ+ GLNW+ + NG
Sbjct: 561 HREAKGLPPKEDEKKKKKREKIDIRKKYEVQPDYVTETGGKLHPYQLEGLNWLRHCWSNG 620
Query: 743 INGILADENGSXK 781
+ ILADE G K
Sbjct: 621 TDAILADEMGLGK 633
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/84 (25%), Positives = 40/84 (47%)
Frame = +3
Query: 615 QKQIQNKRQYLDLKHLHIT*KMEKCGIIKLEGLTG*YHCMKMVLMEFWLMRMGLXKTLQT 794
+++I +++Y +++ ++T K +LEGL HC MGL KT+Q+
Sbjct: 579 REKIDIRKKY-EVQPDYVTETGGKLHPYQLEGLNWLRHCWSNGTDAILADEMGLGKTVQS 637
Query: 795 ISLLGYMKHXKNVPGPHIXIVPKS 866
++ L + + GP + P S
Sbjct: 638 LTFLYSLMKEGHCKGPFLIAAPLS 661
>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical
protein H06O01.2 protein.
Length = 1461
Score = 45.6 bits (103), Expect = 5e-05
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 5/56 (8%)
Frame = +2
Query: 629 KQKTIFRFEASPHYIK-NGE----MRDYQVRGLNWMISLYENGINGILADENGSXK 781
K+ +FE+ P ++K +GE +RDYQ+ GLNWM+ + G + ILADE G K
Sbjct: 381 KRPKFEKFESMPDFLKTDGESTHKLRDYQLEGLNWMVYAWCKGNSSILADEMGLGK 436
Score = 37.5 bits (83), Expect = 0.012
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = +3
Query: 768 MGLXKTLQTISLLGYMKHXKNVPGPHIXIVPKS 866
MGL KT+Q+ISLL + H ++ GP++ +VP S
Sbjct: 432 MGLGKTIQSISLLASLFHRYDLAGPYLVVVPLS 464
>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = +2
Query: 572 RHRKTEQEEDGELLAETNSKQKT--IFRFEASPHYIKN--GEMRDYQVRGLNWMISLYEN 739
R K ++ E+ + ++K + ++E P +I G + YQ+ G+NW+ + N
Sbjct: 574 REAKGLGPKEDEVTSRRKKREKIDILKKYEVQPDFISETGGNLHPYQLEGINWLRHCWSN 633
Query: 740 GINGILADENGSXK 781
G + ILADE G K
Sbjct: 634 GTDAILADEMGLGK 647
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +3
Query: 699 KLEGLTG*YHCMKMVLMEFWLMRMGLXKTLQTISLLGYMKHXKNVPGPHIXIVPKS 866
+LEG+ HC MGL KT+Q+++ L + + GP + P S
Sbjct: 620 QLEGINWLRHCWSNGTDAILADEMGLGKTVQSLTFLYTLMKEGHTKGPFLIAAPLS 675
>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = +2
Query: 572 RHRKTEQEEDGELLAETNSKQKT--IFRFEASPHYIKN--GEMRDYQVRGLNWMISLYEN 739
R K ++ E+ + ++K + ++E P +I G + YQ+ G+NW+ + N
Sbjct: 574 REAKGLGPKEDEVTSRRKKREKIDILKKYEVQPDFISETGGNLHPYQLEGINWLRHCWSN 633
Query: 740 GINGILADENGSXK 781
G + ILADE G K
Sbjct: 634 GTDAILADEMGLGK 647
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +3
Query: 699 KLEGLTG*YHCMKMVLMEFWLMRMGLXKTLQTISLLGYMKHXKNVPGPHIXIVPKS 866
+LEG+ HC MGL KT+Q+++ L + + GP + P S
Sbjct: 620 QLEGINWLRHCWSNGTDAILADEMGLGKTVQSLTFLYTLMKEGHTKGPFLIAAPLS 675
>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
Length = 1787
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = +2
Query: 572 RHRKTEQEEDGELLAETNSKQKT--IFRFEASPHYIKN--GEMRDYQVRGLNWMISLYEN 739
R K ++ E+ + ++K + ++E P +I G + YQ+ G+NW+ + N
Sbjct: 574 REAKGLGPKEDEVTSRRKKREKIDILKKYEVQPDFISETGGNLHPYQLEGINWLRHCWSN 633
Query: 740 GINGILADENGSXK 781
G + ILADE G K
Sbjct: 634 GTDAILADEMGLGK 647
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +3
Query: 699 KLEGLTG*YHCMKMVLMEFWLMRMGLXKTLQTISLLGYMKHXKNVPGPHIXIVPKS 866
+LEG+ HC MGL KT+Q+++ L + + GP + P S
Sbjct: 620 QLEGINWLRHCWSNGTDAILADEMGLGKTVQSLTFLYTLMKEGHTKGPFLIAAPLS 675
>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
assigned gene nameprotein 192 protein.
Length = 2957
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +2
Query: 674 KNGE-MRDYQVRGLNWMISLYENGINGILADENGSXKNFAN-NFSTGIYE 817
KNG +R+YQ G++W++ Y N N ILADE G K F + IY+
Sbjct: 1182 KNGNSLREYQFEGVDWLLYCYYNAQNCILADEMGLGKTVQTITFLSRIYD 1231
>Z49128-8|CAA88960.2| 989|Caenorhabditis elegans Hypothetical
protein M03C11.8 protein.
Length = 989
Score = 37.5 bits (83), Expect = 0.012
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 671 IKNG-EMRDYQVRGLNWMISLYENGINGILADENGSXK 781
+K G + DYQ+ G+ W+I +Y +N IL DE G K
Sbjct: 388 LKEGCTLHDYQLIGVKWLIMMYNKDLNAILGDEMGLGK 425
Score = 35.5 bits (78), Expect = 0.050
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 768 MGLXKTLQTISLLGYMKHXKNVPGPHIXIVPKS 866
MGL KT+Q ++ L Y+K GPH+ +VP S
Sbjct: 421 MGLGKTIQIVAFLSYLKQIGKT-GPHLIVVPSS 452
>AL021171-6|CAA15960.2| 989|Caenorhabditis elegans Hypothetical
protein M03C11.8 protein.
Length = 989
Score = 37.5 bits (83), Expect = 0.012
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 671 IKNG-EMRDYQVRGLNWMISLYENGINGILADENGSXK 781
+K G + DYQ+ G+ W+I +Y +N IL DE G K
Sbjct: 388 LKEGCTLHDYQLIGVKWLIMMYNKDLNAILGDEMGLGK 425
Score = 35.5 bits (78), Expect = 0.050
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 768 MGLXKTLQTISLLGYMKHXKNVPGPHIXIVPKS 866
MGL KT+Q ++ L Y+K GPH+ +VP S
Sbjct: 421 MGLGKTIQIVAFLSYLKQIGKT-GPHLIVVPSS 452
>Z82079-1|CAB04949.1| 1529|Caenorhabditis elegans Hypothetical protein
F15D4.1 protein.
Length = 1529
Score = 35.1 bits (77), Expect = 0.066
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +2
Query: 686 MRDYQVRGLNWMISLYENGINGILADENGSXK 781
+R+YQ+ G+ W+ L G++GILAD+ G K
Sbjct: 982 LREYQLEGITWIRFLRTYGLHGILADDMGLGK 1013
>Z80344-7|CAB02491.1| 1529|Caenorhabditis elegans Hypothetical protein
F15D4.1 protein.
Length = 1529
Score = 35.1 bits (77), Expect = 0.066
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +2
Query: 686 MRDYQVRGLNWMISLYENGINGILADENGSXK 781
+R+YQ+ G+ W+ L G++GILAD+ G K
Sbjct: 982 LREYQLEGITWIRFLRTYGLHGILADDMGLGK 1013
>U32275-1|AAA75370.1| 982|Caenorhabditis elegans serine-threonine
kinase protein.
Length = 982
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = +2
Query: 578 RKTEQEEDGELLAET----NSKQKTIFRFEASPHYIKNGEMRDYQVRGLNWMISLYENGI 745
RK + E+ + + +T N +Q ++ + Y N E + ++R LN S YEN +
Sbjct: 599 RKKDIEDGEKKMKKTKNSQNQQQMKLYSAQQLKEYKYNKEAQKTRLRSLNMPRSTYENAM 658
Query: 746 NGILADENGSXKNFANNF 799
+ AD N N+F
Sbjct: 659 KEVKADLNRVKDARENDF 676
>U11280-5|AAA19437.1| 982|Caenorhabditis elegans Protein kinase
protein 18, isoforma protein.
Length = 982
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = +2
Query: 578 RKTEQEEDGELLAET----NSKQKTIFRFEASPHYIKNGEMRDYQVRGLNWMISLYENGI 745
RK + E+ + + +T N +Q ++ + Y N E + ++R LN S YEN +
Sbjct: 599 RKKDIEDGEKKMKKTKNSQNQQQMKLYSAQQLKEYKYNKEAQKTRLRSLNMPRSTYENAM 658
Query: 746 NGILADENGSXKNFANNF 799
+ AD N N+F
Sbjct: 659 KEVKADLNRVKDARENDF 676
>Z48334-4|CAB61010.2| 426|Caenorhabditis elegans Hypothetical
protein F10B5.4 protein.
Length = 426
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 521 CQPLVLEDSHQILECWS*NEKISPFALVENRISWNDQFQSYSRN 390
C ++D H +LE + N+ S L WND+ QSY N
Sbjct: 319 CPVRPIQDKHTLLERYRLNDLDSLKILSNKSPQWNDETQSYVLN 362
>AF143297-1|AAD33902.1| 426|Caenorhabditis elegans tubby homolog
protein.
Length = 426
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 521 CQPLVLEDSHQILECWS*NEKISPFALVENRISWNDQFQSYSRN 390
C ++D H +LE + N+ S L WND+ QSY N
Sbjct: 319 CPVRPIQDKHTLLERYRLNDLDSLKILSNKSPQWNDETQSYVLN 362
>Z66519-14|CAA91377.2| 1146|Caenorhabditis elegans Hypothetical
protein B0334.8 protein.
Length = 1146
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2
Query: 767 NGSXKNFANNFSTGIYETFXKRSWSSHXN 853
NG K A F GIYE SWS+ N
Sbjct: 1109 NGESKEEARKFFAGIYEEAFNGSWSTKTN 1137
>U56101-1|AAC47459.1| 1167|Caenorhabditis elegans AGE-1 protein.
Length = 1167
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2
Query: 767 NGSXKNFANNFSTGIYETFXKRSWSSHXN 853
NG K A F GIYE SWS+ N
Sbjct: 1130 NGESKEEARKFFAGIYEEAFNGSWSTKTN 1158
>AL110499-5|CAB57914.1| 1146|Caenorhabditis elegans Hypothetical
protein B0334.8 protein.
Length = 1146
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2
Query: 767 NGSXKNFANNFSTGIYETFXKRSWSSHXN 853
NG K A F GIYE SWS+ N
Sbjct: 1109 NGESKEEARKFFAGIYEEAFNGSWSTKTN 1137
>AF040659-3|AAK39392.1| 919|Caenorhabditis elegans Hypothetical
protein ZK484.4a protein.
Length = 919
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 590 QEEDGELLAETNSKQKTIFRFEASPHYIKNGEM 688
+EEDGE+ AE+ SK+KT+ E +K M
Sbjct: 457 EEEDGEIGAESTSKRKTVTIKEEIDEEVKQTPM 489
>AF040659-2|AAK39393.1| 873|Caenorhabditis elegans Hypothetical
protein ZK484.4b protein.
Length = 873
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 590 QEEDGELLAETNSKQKTIFRFEASPHYIKNGEM 688
+EEDGE+ AE+ SK+KT+ E +K M
Sbjct: 457 EEEDGEIGAESTSKRKTVTIKEEIDEEVKQTPM 489
>AF022969-4|AAB69889.1| 202|Caenorhabditis elegans Hypothetical
protein C29G2.6 protein.
Length = 202
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 161 PSCSQFITKLFNQCTIAG 214
P CS FIT++FNQ AG
Sbjct: 145 PKCSGFITRVFNQMCAAG 162
>Z48334-6|CAA88313.1| 655|Caenorhabditis elegans Hypothetical
protein F10B5.6 protein.
Length = 655
Score = 27.9 bits (59), Expect = 10.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 564 EITDIEKLSKKKMENFWQKQIQN 632
EI IE++ KKK+++FW + N
Sbjct: 478 EIIPIEEVLKKKIDDFWHPMLNN 500
>AF314467-1|AAG41979.1| 655|Caenorhabditis elegans APC6 protein.
Length = 655
Score = 27.9 bits (59), Expect = 10.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 564 EITDIEKLSKKKMENFWQKQIQN 632
EI IE++ KKK+++FW + N
Sbjct: 478 EIIPIEEVLKKKIDDFWHPMLNN 500
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,868,780
Number of Sequences: 27780
Number of extensions: 391874
Number of successful extensions: 1133
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -