Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_M04
(873 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 70 5e-13
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 61 2e-10
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 58 1e-09
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 48 1e-06
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 48 2e-06
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 45 2e-05
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 44 2e-05
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 43 5e-05
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 42 1e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 42 1e-04
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 42 2e-04
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 41 3e-04
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 40 3e-04
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 40 5e-04
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 40 5e-04
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 38 0.002
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 38 0.002
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 37 0.003
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 37 0.003
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 36 0.004
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 36 0.006
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 34 0.023
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 34 0.023
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 33 0.040
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 33 0.053
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 33 0.070
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos... 32 0.093
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 31 0.16
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 31 0.28
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 31 0.28
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 30 0.37
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 30 0.37
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 30 0.49
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces... 29 0.65
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 29 0.86
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 29 1.1
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 28 1.5
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 28 2.0
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 27 2.6
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 27 2.6
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 3.5
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 27 3.5
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 27 3.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 6.1
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 6.1
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 26 6.1
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 26 6.1
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 26 8.1
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 69.7 bits (163), Expect = 5e-13
Identities = 46/169 (27%), Positives = 78/169 (46%), Gaps = 16/169 (9%)
Frame = +3
Query: 198 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 353
+++G L TEA L LF G V + R+ Y +V+ N + G +A+ L
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 354 NGELVHGQAIKIE-AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV- 527
N L+ G+ +I + + T +F+ NL + + F FG ++ C +
Sbjct: 142 NYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAV 201
Query: 528 ------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQR 656
+ YGFVH D+ N AI+ +NGM+++ + + V SR R+R
Sbjct: 202 DELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSR-RER 249
Score = 58.0 bits (134), Expect = 2e-09
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 21/168 (12%)
Frame = +3
Query: 186 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAI 344
GT +FI NL L F +G ++ C + + YGFVH ++ + AI
Sbjct: 166 GTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAI 225
Query: 345 QNLNGELVHGQAIKIEAAKSRKAPSTPT-------TKIFVGNLTDKTRAPEVRELFQKFG 503
+++NG L++ + + + SR+ + T +++ NL + E +LF +FG
Sbjct: 226 EHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFG 285
Query: 504 TVVECDIV-------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 626
+ +V R +GFV+ A+ ELN G+ + V
Sbjct: 286 EITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYV 333
Score = 56.0 bits (129), Expect = 7e-09
Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 31/184 (16%)
Frame = +3
Query: 198 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 356
++I NL + TE + LF ++G + +V R +GFV+ N + ++A+ LN
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322
Query: 357 GELVHGQAIKI-----------------EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRE 485
+ G+ + + E K K +F+ NL D+ ++
Sbjct: 323 DKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKA 382
Query: 486 LFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 644
F FGT+ I+ + +GFV + N A+ E+N M+ G+P+ V L+ +
Sbjct: 383 EFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRK 442
Query: 645 VRQR 656
+R
Sbjct: 443 EVRR 446
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 61.3 bits (142), Expect = 2e-10
Identities = 35/163 (21%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Frame = +3
Query: 195 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 374
++F+G + + T D+ F+ YG +++C ++ +GFV +E+ + R+ + + G+ G
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGKEFMG 64
Query: 375 QAIKIEAAKSRK---------------APSTPTTKIFVGNLTDKTRAPEVRELFQKFGTV 509
I +E A+ + P ++ V NL++ +++++ +K G
Sbjct: 65 SRIVVEPARGERRRRENFRESAASKYPRPRRTGFRLIVENLSEDVSWQDLKDVMRKAGEP 124
Query: 510 VECDIVR---NYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 629
D R G V D+ +A+ LNG ++ GQ + ++
Sbjct: 125 TFTDAHRENPGAGVVEFSTEEDMRNALTSLNGEVIKGQAVTLR 167
Score = 46.0 bits (104), Expect = 7e-06
Identities = 17/76 (22%), Positives = 40/76 (52%)
Frame = +3
Query: 429 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGMMVD 608
T++FVG + + ++ + F+ +G +++C ++ +GFV ++ D D + + G
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGKEFM 63
Query: 609 GQPMKVQLSTSRVRQR 656
G + V+ + R+R
Sbjct: 64 GSRIVVEPARGERRRR 79
Score = 41.1 bits (92), Expect = 2e-04
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Frame = +3
Query: 192 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY---GFVHMENEQVGREAIQNLNGE 362
F++ + NLS+ + DL+ + K G D R G V E+ R A+ +LNGE
Sbjct: 98 FRLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPGAGVVEFSTEEDMRNALTSLNGE 157
Query: 363 LVHGQAIKIEA---AKSRKAPSTPT 428
++ GQA+ + A + P P+
Sbjct: 158 VIKGQAVTLREDPDAANEPLPEVPS 182
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 58.4 bits (135), Expect = 1e-09
Identities = 45/170 (26%), Positives = 84/170 (49%), Gaps = 16/170 (9%)
Frame = +3
Query: 195 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 350
K+FIG L+ +TT+ LR FE++G V++C ++R+ +GF+ +N + E +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 351 LNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV- 527
+ + G+ I + A R+ T K+FVG + E R F +FG V++ ++
Sbjct: 224 EHH--LDGKIIDPKRAIPRE-EQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMM 280
Query: 528 -------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQR 656
R +GFV + V +A + + G+P++V+ +T + R
Sbjct: 281 DKDTGRPRGFGFVTYENESAV-EATMSQPYITIHGKPVEVKRATPKASLR 329
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 48.4 bits (110), Expect = 1e-06
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Frame = +3
Query: 198 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 353
+F+ ++ + E +L+ +F K+GTV I+R +GF+ + AI NL
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 354 NGELVHGQAIKIEAAKSRKAPSTPTTKIFVG 446
N + +G+ + ++ AK R P +PT ++G
Sbjct: 163 NSQEFYGRVLNVQKAK-RSRPHSPTPGKYMG 192
Score = 43.2 bits (97), Expect = 5e-05
Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 16/163 (9%)
Frame = +3
Query: 336 EAIQNLNGELV--HGQAIKIEAAKSRKAPSTPTT---KIFVGNLTDKTRAPEVRELFQKF 500
E +Q++N + V + ++ ++ + + AP +FV + + + E++++F KF
Sbjct: 65 EPLQSMNEDEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKF 124
Query: 501 GTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQR 656
GTV I+ R +GF+ + AI LN G+ + VQ + R R
Sbjct: 125 GTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAK---RSR 181
Query: 657 PGMGDPEQCYRCGRGGHWSKECP---KALGPDRNGFRDRAFGR 776
P P + R + S++ P K G RN +RDR R
Sbjct: 182 PHSPTPGKYMGYDRRRN-SRDFPSNNKDGGYRRNNYRDRDSNR 223
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 47.6 bits (108), Expect = 2e-06
Identities = 43/180 (23%), Positives = 76/180 (42%), Gaps = 31/180 (17%)
Frame = +3
Query: 198 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 353
+F+ NL+ +T + DL F G + +V N YGFV + + A + L
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 354 NGELVHGQAIKIEAAKSRKAPSTPT---------------TKIFVGNLTDKTRAPE-VRE 485
+ +HG+ ++++ A RK T ++ + NL + P+ +
Sbjct: 67 KNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHLEP 126
Query: 486 LFQKFGTVVECDI-------VRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 644
F KFG V E I + + FV + +A+ LNG +DG+P+ V + S+
Sbjct: 127 HFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSK 186
Score = 35.1 bits (77), Expect = 0.013
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Frame = +3
Query: 435 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKEL 590
+FV NL +T+ ++ F G + +V N YGFV D A KEL
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 591 NGMMVDGQPMKVQLSTSRVR 650
+ G+ +++ +T R R
Sbjct: 67 KNKKLHGRILRLDFATPRKR 86
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 44.8 bits (101), Expect = 2e-05
Identities = 42/186 (22%), Positives = 79/186 (42%), Gaps = 34/186 (18%)
Frame = +3
Query: 189 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAI 344
T +F+G LS + L FE+YGT+V ++ + YG+V E + + A+
Sbjct: 262 TCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAV 321
Query: 345 QNLNGELVHGQAIKIEAAKSRKAP----------------STPTTKIFVGNLTDKTRAPE 476
+ + G+ + ++ + R A S P+ +FVGNL+ +
Sbjct: 322 AANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDD 381
Query: 477 VRELFQKFGTVVECDI--------VRNYGFVHLDATGDVNDAIK--ELNGMMVDGQPMKV 626
+ F G + + ++ +G+V D++ A K E+NG + G+P ++
Sbjct: 382 LSTAFGGCGDIQSIRLPTDPQSGRLKGFGYV---TFSDIDSAKKCVEMNGHFIAGRPCRL 438
Query: 627 QLSTSR 644
ST R
Sbjct: 439 DFSTPR 444
Score = 29.9 bits (64), Expect = 0.49
Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Frame = +3
Query: 417 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVN 572
S T +FVG L+ + + F+++GT+V ++ + YG+V +
Sbjct: 259 SNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAK 318
Query: 573 DAIKELNGMMVDGQPMKVQLSTSR 644
A+ +DG+ + + LS R
Sbjct: 319 AAVAANGTKEIDGRMVNLDLSNPR 342
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 44.4 bits (100), Expect = 2e-05
Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 25/155 (16%)
Frame = +3
Query: 237 DLRPLFEKYGTVVECDIVRNY-------GFVHMENEQVGREAIQNLNGELVHGQAI---- 383
DL+ LF + G+V+ DI N G V M + + AIQ L+ G+ +
Sbjct: 198 DLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRL 257
Query: 384 ------KIEAAKSRKAPSTPTTK-IFVGNLTDKTRAPEVRELFQKFGTVVECDIV----- 527
KIE P P + I+VGNL T + +LF G+V+ I
Sbjct: 258 DRFAHHKIEDLVYHAYPHGPCSDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTG 317
Query: 528 --RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 626
+ +G V + D +I++LNG G+P+++
Sbjct: 318 RSKGFGVVQFENENDAASSIEKLNGYRYGGRPLQL 352
Score = 40.3 bits (90), Expect = 3e-04
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Frame = +3
Query: 198 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 356
I++GNL T++ +L LF G+V+ I + +G V ENE +I+ LN
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 357 GELVHGQAIKIEAAK-SRKAPSTPT 428
G G+ +++ A + P+ PT
Sbjct: 342 GYRYGGRPLQLSYAHYATPLPAVPT 366
Score = 31.9 bits (69), Expect = 0.12
Identities = 40/191 (20%), Positives = 82/191 (42%), Gaps = 45/191 (23%)
Frame = +3
Query: 195 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNL 353
++++GNLS + +L+ + G V+ C+I+ + + + R AI+ L
Sbjct: 67 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTL 126
Query: 354 NGELVHGQAIKIE----------------AAKSRKAPSTPTTKIFVGNLTD--------- 458
+ + G+ + I +A S S P ++FVGN++
Sbjct: 127 SNQKFMGRLVYIREDREQNARFGSSSVSPSASSNGKDSEPDRQLFVGNVSSISNPLYSFP 186
Query: 459 KTRAP------EVRELFQKFGTVVECDI-------VRNYGFVHLDATGDVNDAIKELNGM 599
+T P ++++LF++ G+V+ DI R G V + + + AI+ L+
Sbjct: 187 RTLLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNT 246
Query: 600 MVDGQPMKVQL 632
G+ ++V+L
Sbjct: 247 DFMGRTLEVRL 257
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 43.2 bits (97), Expect = 5e-05
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Frame = +3
Query: 144 FFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHME 317
F+ + P + T +F+G LS +E +L+ LF+ +G +V I + GFV
Sbjct: 287 FYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFV 346
Query: 318 NEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTP 425
N Q AI L G + I++ +++ + P
Sbjct: 347 NRQSAEIAINQLQGYPLGNSRIRLSWGRNQNPIAAP 382
Score = 41.1 bits (92), Expect = 2e-04
Identities = 40/173 (23%), Positives = 73/173 (42%), Gaps = 24/173 (13%)
Frame = +3
Query: 198 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 353
+++G L TEA ++ ++ G V+ ++RN Y FV + A+ ++
Sbjct: 95 LWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SM 153
Query: 354 NGELVHG--QAIKIEAA-----KSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQ------ 494
N + + G K+ A + + IFVG+L+ +V LF
Sbjct: 154 NNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSC 213
Query: 495 ---KFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 644
K T + ++ R YGFV D A+ E+ G + +P++V L+T +
Sbjct: 214 KSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPK 266
Score = 33.1 bits (72), Expect = 0.053
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +3
Query: 420 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELN 593
T + +FVG L+ E++ LFQ FG +V I + GFV AI +L
Sbjct: 300 TANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQ 359
Query: 594 GMMVDGQPMKVQLSTSRVRQRP 659
G + +++LS R Q P
Sbjct: 360 GYPLGNS--RIRLSWGR-NQNP 378
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 41.9 bits (94), Expect = 1e-04
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +3
Query: 195 KIFIGNLSDKT-TEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVH 371
++F+G+L+ K+ ++ +L +F+ YG + + + NYGFV + A+ G V
Sbjct: 364 RLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFVQFFTNEDCARALNAEQGNFVR 423
Query: 372 GQAIKIEAAKSRK 410
GQ + +E +K +K
Sbjct: 424 GQKLHLEISKIQK 436
Score = 35.5 bits (78), Expect = 0.010
Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +3
Query: 429 TKIFVGNLTDKTRAPE-VRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGMMV 605
+++F+G+L K+ + + ++F+ +G + + + NYGFV D A+ G V
Sbjct: 363 SRLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFVQFFTNEDCARALNAEQGNFV 422
Query: 606 DGQPMKVQLS 635
GQ + +++S
Sbjct: 423 RGQKLHLEIS 432
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 41.9 bits (94), Expect = 1e-04
Identities = 47/189 (24%), Positives = 74/189 (39%), Gaps = 38/189 (20%)
Frame = +3
Query: 153 HSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEK-YGTVVECDIV--------RNYGF 305
H+N S+ P F IF+G+L T ++DL F Y + I+ R YGF
Sbjct: 172 HNNFVSRDP---EFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGF 228
Query: 306 VHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPS---------TPT---------- 428
V +E+ + A+ ++ G L G+ ++I A + S PT
Sbjct: 229 VRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQD 288
Query: 429 --------TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDA 578
T +FVG L +++ FQ FG ++ I + GFV A
Sbjct: 289 LCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKA 348
Query: 579 IKELNGMMV 605
I + G +V
Sbjct: 349 INTMQGALV 357
Score = 32.3 bits (70), Expect = 0.093
Identities = 27/136 (19%), Positives = 54/136 (39%), Gaps = 17/136 (12%)
Frame = +3
Query: 294 NYGFVHMENEQVGREAIQNLNGELVHGQ--AIKIEAAK------SRKAPSTPTTKIFVGN 449
+Y FV + A+ N ++ G K+ A + P IFVG+
Sbjct: 129 SYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGD 188
Query: 450 LTDKTRAPEVRELFQK-FGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMM 602
L T ++ F+ + + I+ R YGFV + + A+ + G +
Sbjct: 189 LLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYL 248
Query: 603 VDGQPMKVQLSTSRVR 650
G+P+++ +++ + R
Sbjct: 249 CQGRPLRISVASPKSR 264
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 41.5 bits (93), Expect = 2e-04
Identities = 41/175 (23%), Positives = 75/175 (42%), Gaps = 24/175 (13%)
Frame = +3
Query: 192 FKIFIGNLSDKTTEADLRPLFEKY----GTVVEC--DIVRNYGFVHMENEQVGREAIQNL 353
+ +FI N+ + +E D++ LF++Y V+ C + F+ + NE + A +
Sbjct: 73 YMLFISNIDPEVSENDIKYLFQRYNFISARVLRCVDGTSTSIAFIWLANESDIQNAQVEM 132
Query: 354 NGELVHGQAIKIEAAKSRK-----AP---STP----------TTKIFVGNLTDKTRAPEV 479
G ++I + + KS K +P TP T ++V L + E+
Sbjct: 133 QGAFCLKRSILVHSVKSDKNTYLSSPGFYGTPQPLNQFTDPNNTAVYVHQLPENITTQEL 192
Query: 480 RELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 644
R F FG ++ + N G + AI E+N + G +++QLS +R
Sbjct: 193 RSYFLHFGEILYTQVNNNSGRIVFAQRYFAEQAINEMNNFPLHG--VRIQLSWAR 245
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 40.7 bits (91), Expect = 3e-04
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 13/123 (10%)
Frame = +3
Query: 357 GELVHGQAIKIEAAKSRKAPST---------PTTKIFVGNLTDKTRAPEVRELFQKFGTV 509
G + HG+ +K+ A+ P + + +F+GNL E+ E F KFG +
Sbjct: 266 GFIFHGRPLKLTFARPSPLPESIQNFCSNTAASRNVFIGNLPSSYHEKEIEEAFGKFGKI 325
Query: 510 VECDIV--RNYGFVHLDATGDVNDAIKELNGMMVDG--QPMKVQLSTSRVRQRPGMGDPE 677
I+ +N FVH ++ DAIK + + D ++ + R P D
Sbjct: 326 EHIKILSKKNIAFVHF---LNIRDAIKVVRTLSCDPDYHSWRIFFGSDRCANHPPSFDER 382
Query: 678 QCY 686
C+
Sbjct: 383 SCF 385
Score = 31.5 bits (68), Expect(2) = 0.007
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 198 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLN 356
+FIGNL E ++ F K+G + I+ +N FVH N + + ++ L+
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDAIKVVRTLS 355
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +3
Query: 198 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--YGFVHMENEQVGREAIQNL 353
++ ++SD T +L + +YG + ++N GFV N +A+ L
Sbjct: 502 VYFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYTNISNAMKAVNGL 555
Score = 23.4 bits (48), Expect(2) = 0.007
Identities = 9/38 (23%), Positives = 20/38 (52%)
Frame = +3
Query: 390 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFG 503
+ + +++ +F+GNL KT+ E+ +L + G
Sbjct: 396 DRCRQQESKDNGNRTVFLGNLHTKTKGHEICDLIRHGG 433
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 40.3 bits (90), Expect = 3e-04
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Frame = +3
Query: 192 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQN 350
F++F+GNL + + L F +Y ++V+ +VR+ +GFV ++ +A +
Sbjct: 30 FRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWRE 89
Query: 351 LNGELVHGQAIKIEAAKSRKAPSTPTTK 434
NG+ + + +K+ A S P+ K
Sbjct: 90 KNGKYIGSRPVKLSRATSDVKPNEVNEK 117
Score = 37.5 bits (83), Expect = 0.002
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Frame = +3
Query: 432 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKEL 590
++FVGNL + + + F ++ ++V+ +VR+ +GFV + A +E
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREK 90
Query: 591 NGMMVDGQPMKVQLSTSRVR 650
NG + +P+K+ +TS V+
Sbjct: 91 NGKYIGSRPVKLSRATSDVK 110
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 39.9 bits (89), Expect = 5e-04
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Frame = +3
Query: 423 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDA 578
P +FV L T+ ++ +F +FG ++ C ++R+ Y F+ D V A
Sbjct: 242 PENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKA 301
Query: 579 IKELNGMMVDGQPMKVQLSTSRVRQR 656
++ +++D + V S S R R
Sbjct: 302 YFKMQNVLIDDSRIHVDFSQSVARYR 327
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 39.9 bits (89), Expect = 5e-04
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 12/82 (14%)
Frame = +3
Query: 192 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDI----VR--------NYGFVHMENEQVGR 335
F++F+G LS T ++++R LFE GTV + I VR FV N++
Sbjct: 44 FRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVD 103
Query: 336 EAIQNLNGELVHGQAIKIEAAK 401
+AI+ LNG+ + + I ++ A+
Sbjct: 104 KAIETLNGKTLDDREIVVQKAR 125
Score = 38.3 bits (85), Expect = 0.001
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 12/88 (13%)
Frame = +3
Query: 432 KIFVGNLTDKTRAPEVRELFQKFGTVVECDI----VR--------NYGFVHLDATGDVND 575
++FVG L+ T+ E+R LF+ GTV + I VR FV + DV+
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 576 AIKELNGMMVDGQPMKVQLSTSRVRQRP 659
AI+ LNG +D + + VQ V+++P
Sbjct: 105 AIETLNGKTLDDREIVVQ-KARPVQEQP 131
Score = 26.6 bits (56), Expect = 4.6
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 291 RNYGFVHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRK 410
R +GFV N + AI+ +NG+ V + +++A R+
Sbjct: 258 RGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFRE 297
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 37.9 bits (84), Expect = 0.002
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +3
Query: 198 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNL 353
+F+GNL + TE ++R E +G + + IV RN FVH N +A+Q L
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFLNIAAAIKAVQEL 261
Score = 33.5 bits (73), Expect = 0.040
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 435 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKEL 590
+F+GNL + E+RE + FG + + IV RN FVH A++EL
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFLNIAAAIKAVQEL 261
Score = 27.9 bits (59), Expect = 2.0
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 11/94 (11%)
Frame = +3
Query: 342 IQNLNGELVHGQAIKIEAAK-SRKAPST--------PTTKIFVGNLTDKTRAPEVRELFQ 494
+ N++G ++ + +KI K S PS + I++GN D ++E F+
Sbjct: 376 MSNIHGLVIRNRRLKIGWGKHSGPLPSNIALAVAGGASRNIYIGNADDSLTIERLKEDFE 435
Query: 495 KFGTVVECDIVR--NYGFVHLDATGDVNDAIKEL 590
+FG + + R N FV+ + +AI +
Sbjct: 436 EFGEIEYVNFFREKNCAFVNFTSLASAINAIDRI 469
Score = 26.2 bits (55), Expect = 6.1
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +3
Query: 180 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR--NYGFVHMENEQVGREAIQNL 353
G + I+IGN D T L+ FE++G + + R N FV+ + AI +
Sbjct: 410 GGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNCAFVNFTSLASAINAIDRI 469
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 37.5 bits (83), Expect = 0.002
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 13/89 (14%)
Frame = +3
Query: 417 STPTT---KIFVGNLTDKT--RAPEVRELFQKFGTVVEC--------DIVRNYGFVHLDA 557
STPT +FV NL D ++ ELF KFG + C +I + YGFV
Sbjct: 412 STPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSH 471
Query: 558 TGDVNDAIKELNGMMVDGQPMKVQLSTSR 644
+ AI LNG++ + + V + R
Sbjct: 472 PFEAVQAINTLNGVLFGKKRLFVNYAEKR 500
Score = 34.7 bits (76), Expect = 0.017
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 10/91 (10%)
Frame = +3
Query: 198 IFIGNLSDKTT--EADLRPLFEKYGTVVEC--------DIVRNYGFVHMENEQVGREAIQ 347
+F+ NL D L LF K+G + C +I + YGFV + +AI
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAIN 480
Query: 348 NLNGELVHGQAIKIEAAKSRKAPSTPTTKIF 440
LNG L + + + A+ R+ + IF
Sbjct: 481 TLNGVLFGKKRLFVNYAEKREDRKKRLSAIF 511
Score = 33.5 bits (73), Expect = 0.040
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Frame = +3
Query: 198 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------------YGFVHMENEQVGRE 338
I++GNL +DL LFE +G + ++ + F+ EN+
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81
Query: 339 AIQNLNGELVHGQAIKIE 392
AI +LNG G +K+E
Sbjct: 82 AIASLNGSSFQGNTLKVE 99
Score = 31.5 bits (68), Expect = 0.16
Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 13/97 (13%)
Frame = +3
Query: 378 AIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------- 533
A++ + K++++ I+VGNL ++ ++ ELF+ FG + ++
Sbjct: 3 ALEKLSEKNKRSTKKCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDS 62
Query: 534 -----YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 629
+ F+ + ++AI LNG G +KV+
Sbjct: 63 KSPTLFAFITFENKCSADNAIASLNGSSFQGNTLKVE 99
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 37.1 bits (82), Expect = 0.003
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 681 CYRCGRGGHWSKECPKALGPDRNG 752
CYRCG+ GHW + CP P+ +G
Sbjct: 185 CYRCGQKGHWIQACPTNADPNYDG 208
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 37.1 bits (82), Expect = 0.003
Identities = 40/178 (22%), Positives = 80/178 (44%), Gaps = 29/178 (16%)
Frame = +3
Query: 198 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 353
+F+ L+++ T +L FE+ G V + IVR+ +V +E + AI L
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIA-L 300
Query: 354 NGELVHGQAIKI---EAAKSRKA-----------PSTPTTKIFVGNLTDKTRAPEVRELF 491
+G+ + G + + EA K+RKA P ++ V N+ +V+ +F
Sbjct: 301 SGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVKAIF 360
Query: 492 QKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 644
+ FG + + R+ +G++ +A++++NG + G+ M+V L +
Sbjct: 361 EPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCLGNDK 418
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 35.5 bits (78), Expect = 0.010
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Frame = +3
Query: 198 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 353
+F+ LS T E+D+ F +YG + +VRN Y FV E E+ + A +
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161
Query: 354 NGELVHGQAIKIEAAKSR 407
G +++G+ I ++ + R
Sbjct: 162 AGLMLNGRRIVVDVERGR 179
Score = 34.7 bits (76), Expect(2) = 0.004
Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 9/111 (8%)
Frame = +3
Query: 423 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDA 578
P +F+ L+ T+ ++ F ++G + +VRN Y FV + D+ A
Sbjct: 98 PYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVA 157
Query: 579 IKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGG-HWSKECPK 728
K G+M++G+ + V + R R G + G GG H++KE P+
Sbjct: 158 YKASAGLMLNGRRIVVDVE----RGRTVKGWLPRKLGGGLGGRHYTKERPR 204
Score = 21.0 bits (42), Expect(2) = 0.004
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 735 GPDRNGFRDRAFGRDPTLRRRRH 803
GP R+ GRD + +RRR+
Sbjct: 238 GPTRSSHSSDYGGRDSSPKRRRY 260
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 36.3 bits (80), Expect = 0.006
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Frame = +3
Query: 198 IFIGNLSDKTTEADLRPLFEKYGTVV-------ECDIVRNYGFVHMENEQVGREAIQNLN 356
+ +GNL+ TE+ L F +G ++ E + R+Y FV + + +EA++N+N
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
Query: 357 GELVHGQAIKIEAA 398
++ + I++ A
Sbjct: 68 YSILCDRCIRVSPA 81
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 34.3 bits (75), Expect = 0.023
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +3
Query: 198 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNG 359
+FI NLS K T ++ LF +YG V + + R FV EN Q R A + L+G
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACEKLSG 72
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 34.3 bits (75), Expect = 0.023
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +3
Query: 423 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNG 596
PT ++VGNL A V F +GTV ++ ++ F++ D+ ++ELNG
Sbjct: 585 PTHALWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHSAFLNFDSVETAKHVLEELNG 644
Query: 597 MMV 605
+
Sbjct: 645 KRI 647
Score = 33.9 bits (74), Expect = 0.030
Identities = 28/141 (19%), Positives = 63/141 (44%), Gaps = 7/141 (4%)
Frame = +3
Query: 189 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGE 362
T +++GNL + + F YGTV ++ ++ F++ ++ + + ++ LNG+
Sbjct: 586 THALWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHSAFLNFDSVETAKHVLEELNGK 645
Query: 363 LVH--GQAIKIEAAKSRKAPSTPTTKIFVG---NLTDKTRAPEVRELFQKFGTVVECDIV 527
+ + I AK + S + G ++ + P +RE++ ++V
Sbjct: 646 RIFFGSDPVCISFAKVASSSSESSHSAVDGLNKAFSNVSFVPSLREVYDDL-----INVV 700
Query: 528 RNYGFVHLDATGDVNDAIKEL 590
+++GF L + +A EL
Sbjct: 701 QSFGFKDLSKIYQILNAACEL 721
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 33.5 bits (73), Expect = 0.040
Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Frame = +3
Query: 423 PTTKIFVGNLTDKTRAPE----VRELFQKFGTVVECDIVRN-----YGFVHLDATGDVND 575
P +FV +L E V++ FQ++G ++ ++++ Y FV T D +
Sbjct: 77 PVACLFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKDWLQRPYSFVQFQNTDDASK 136
Query: 576 AIKELNGMMVDGQPMKVQ 629
A+ E ++DG+ ++++
Sbjct: 137 ALSEAQNTILDGRHIRIE 154
Score = 32.3 bits (70), Expect = 0.093
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Frame = +3
Query: 177 PGTGTFKIFIGNLSD-KTTEADLRPLFEKYGTVVECDIVRN-----YGFVHMENEQVGRE 338
P + IF+G L T L LF KYG V++C I+ + F+ +++Q
Sbjct: 360 PPIDPYSIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRFDSQQAAYA 419
Query: 339 AI 344
A+
Sbjct: 420 AV 421
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 33.1 bits (72), Expect = 0.053
Identities = 17/57 (29%), Positives = 33/57 (57%)
Frame = -2
Query: 632 QLHLHGLSVDHHTVQLFDSVVHIARRVQMHEAVVTHDIALDDRPELLKQLADFGRAR 462
QLH ++ H + Q+F+++ ++ R +H + +I L++ +L + ADFG AR
Sbjct: 368 QLHFTPGNIKHLSKQIFEALAYLHHRGVLHRDIKGSNILLNNNGDL--KFADFGLAR 422
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 32.7 bits (71), Expect = 0.070
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 435 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY--GFVHL 551
+F+G +T R P +R +F++FG+V + NY GF+ +
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKM 448
Score = 30.7 bits (66), Expect = 0.28
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +3
Query: 198 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY--GFVHMENEQVGREA 341
+F+G ++ E LR +FE++G+V + NY GF+ M +A
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKMFRRDAAEKA 457
>SPBC8D2.01 |gsk31||serine/threonine protein kinase
Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 381
Score = 32.3 bits (70), Expect = 0.093
Identities = 17/62 (27%), Positives = 34/62 (54%)
Frame = -2
Query: 641 TRRQLHLHGLSVDHHTVQLFDSVVHIARRVQMHEAVVTHDIALDDRPELLKQLADFGRAR 462
TRR+ + LS+ + QLF ++ ++ H + ++ +D + +LK L DFG A+
Sbjct: 116 TRRRKSIPNLSIKLYAFQLFRALAYLHSTGVCHRDIKPQNLLVDYKTGILK-LCDFGSAK 174
Query: 461 LV 456
++
Sbjct: 175 VL 176
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 31.5 bits (68), Expect = 0.16
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +3
Query: 645 VRQRPGMGDPEQ---CYRCGRGGHWSKEC 722
VR P +P Q CY+CGR GH +++C
Sbjct: 70 VRDCPSSPNPRQGAECYKCGRVGHIARDC 98
Score = 30.7 bits (66), Expect = 0.28
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +3
Query: 669 DPEQ---CYRCGRGGHWSKECPKALGPDRNGFRDRAFGR 776
+P+Q CY CG GH ++CP + P R G GR
Sbjct: 53 EPQQEKTCYACGTAGHLVRDCPSSPNP-RQGAECYKCGR 90
Score = 30.3 bits (65), Expect = 0.37
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 678 QCYRCGRGGHWSKECPK 728
+CY CG GH ++EC K
Sbjct: 18 RCYNCGENGHQARECTK 34
Score = 27.9 bits (59), Expect = 2.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 678 QCYRCGRGGHWSKECPKA 731
+CY CG+ GH S EC +A
Sbjct: 136 KCYSCGKIGHRSFECQQA 153
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 30.7 bits (66), Expect = 0.28
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +3
Query: 375 QAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 533
Q I + ++ P PT ++FV N++ + ++R F+ FG V + D+ N
Sbjct: 77 QTINYDYNENSLGPEPPT-QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLN 128
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 195 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 296
++F+ N+S T LR F+ +G V + D+ N
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLN 128
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 30.7 bits (66), Expect = 0.28
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Frame = +3
Query: 198 IFIGNLSDKTTEADLRP----LFEKYGTVVE-----CDIVRNYGFVHMENEQVGREAIQN 350
+++ NL+DK + DLR LF YGTVV+ +R V + A++
Sbjct: 6 LYVNNLNDKINKNDLRTALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAMKA 65
Query: 351 LNGELVHGQAIKIEAAKSR 407
L + G+ +KI+ A S+
Sbjct: 66 LKNFIFFGKEMKIQYAHSK 84
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 30.3 bits (65), Expect = 0.37
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 8/113 (7%)
Frame = +3
Query: 198 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN------YGFVHME-NEQVGREAIQNLN 356
+F+GNL+ + E L F G++ IVR+ GF +++ + +G + LN
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLN 331
Query: 357 -GELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVV 512
++ G+ ++I AKS K S +K G+ +T R+L K G +
Sbjct: 332 EKKMPEGRTLRIMRAKSTKPKSITRSK--RGDEKTRTLQGRARKLIGKAGNAL 382
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 30.3 bits (65), Expect = 0.37
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +3
Query: 441 VGNLTDKTRAPEVRELFQKFGTV 509
V NL+D TR E+R+LF++FG +
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGI 228
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 29.9 bits (64), Expect = 0.49
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 12/112 (10%)
Frame = +3
Query: 198 IFIGNLSDK--TTEADLRPLFEKYGTVVE----C----DIVRNYGFVHMENEQVGREAIQ 347
+++ NL D T ++ L LF +G+++ C I + YGFV + A
Sbjct: 384 LYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKD 443
Query: 348 NLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGN--LTDKTRAPEVRELFQK 497
LNG +V + I + A+ RK+ + F N +++T + + LF K
Sbjct: 444 TLNGMMVGKKRIFVCFAE-RKSDRIRRLQAFFANKPTSEQTAQQDNKALFVK 494
>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 183
Score = 29.5 bits (63), Expect = 0.65
Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Frame = +3
Query: 429 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYG----FVHLDATGDVNDAIKELNG 596
T + + NL T + +V FG ++ C + + G V +++L+G
Sbjct: 100 TNVVIENLAPGTSSDDVAATLLNFGEILNCQVNDSQGKVRASVRFSTLASAQQVVQKLDG 159
Query: 597 MMVDGQPMKVQLSTSRVRQR 656
+ DG + + + ++R
Sbjct: 160 VTADGFKLSCYIKKNSKKRR 179
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 29.1 bits (62), Expect = 0.86
Identities = 28/112 (25%), Positives = 44/112 (39%)
Frame = +3
Query: 102 YLVFIFLTCVIYLLFFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVEC 281
Y VF+FL V Y L S + G+ + F S+ A + P F Y +
Sbjct: 6 YSVFLFLHIVFYSLL-------SAVNGSPSLDYF-ETCSNFVPRAGI-PTFSPYAVIKNF 56
Query: 282 DIVRNYGFVHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKI 437
D V ++ + G I NG +H ++ E K ++ TTK+
Sbjct: 57 DEVNRMYYIQVVGNLSGVITIVGGNGSHIHAASVYSETYALGKLVTSNTTKL 108
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 198 IFIGNLSDKTTEADLRPLFEKYGTV 272
+F+GNL +TT+ADL+ F + G +
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQI 254
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +3
Query: 390 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTV 509
+ A + + P++ +FVGNL +T +++E F + G +
Sbjct: 215 KTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQI 254
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 28.3 bits (60), Expect = 1.5
Identities = 27/132 (20%), Positives = 59/132 (44%), Gaps = 17/132 (12%)
Frame = +3
Query: 297 YGFVHMENEQVGREAIQNLNGELVHGQAIKIE--------AAKSRKAPSTPT--TKIFVG 446
+GFV +++ A+ +NG ++ G ++I+ AA+ RK S+ TKI +
Sbjct: 667 FGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPKGTKILIK 726
Query: 447 NLTDKTRAPEVRELFQKFGTVVECDI-------VRNYGFVHLDATGDVNDAIKELNGMMV 605
NL + +V+ L +G + + R + F + +A++ L +
Sbjct: 727 NLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMRALKNTHL 786
Query: 606 DGQPMKVQLSTS 641
G+ + +Q +++
Sbjct: 787 LGRHLVLQYASN 798
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Frame = +3
Query: 198 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 353
+F+GN+ +E + +F + G V +V + YGF + + A++ L
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 354 NGELVHGQAIKIE 392
N + + I++E
Sbjct: 69 NNSELGPRKIRVE 81
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -2
Query: 656 PLPDTTRRQLHLHG-LSVDHHTVQLFD 579
PLPD T R+LHL+ L H++ L D
Sbjct: 633 PLPDETTRRLHLNNLLKYQKHSLSLED 659
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 198 IFIGNLSDKTTEADLRPLFEKYGTV 272
+++GNLS TTE + LF K G +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEI 58
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/83 (19%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Frame = +3
Query: 408 KAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTV--------VECDIVRNYGFVHLDATG 563
++P P I V NLT + E+F +G + + ++ + Y ++
Sbjct: 92 RSPEEPLRTILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHD 151
Query: 564 DVNDAIKELNGMMVDGQPMKVQL 632
+A+ ++N +DG+ + V +
Sbjct: 152 QAANAVDKMNNAELDGEELFVSI 174
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 27.1 bits (57), Expect = 3.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 681 CYRCGRGGHWSKECPKAL 734
C+ C GH SK+CP L
Sbjct: 89 CHNCKGNGHISKDCPHVL 106
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 27.1 bits (57), Expect = 3.5
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +1
Query: 175 CRAPVLSKSSSGTFLIKPQKPILDRYSKNTVRS*NAISSEITVSCTWKTNKSAAKP 342
CR+ VL T I ILD SK +V +A+S +T+ C K S P
Sbjct: 236 CRSCVLIVGQRSTNSILLVYQILDGLSKKSVDYTDAVSLRMTLICLQKLEPSEHDP 291
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1
Query: 735 PAPSGTPWTSGPRGHSGSTARGRPCPAAAGHDSSTTAPSWA 613
P P+ TP P+ SG+ + P PA + S APS A
Sbjct: 1044 PIPTSTPPV--PKSSSGAPSAPPPVPAPSSEIPSIPAPSGA 1082
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Frame = +3
Query: 198 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 353
+++GN+ + E + +F++ G V +V + YGF + A++NL
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 354 N 356
N
Sbjct: 67 N 67
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 640 LVDNCTFMGCPSTIIPFNSLIASFTSPVASKCT 542
+VD+ T S++IP +S + + +S VAS T
Sbjct: 113 VVDSATSAAASSSVIPTSSSVVASSSEVASSTT 145
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +3
Query: 432 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 527
+I+VG L+ + ++ F +FG+V +I+
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEII 37
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 512 DDRPELLKQLADFGRARLVR*ITHEYFSGWRR 417
D + K+ AD A+L +THE GWRR
Sbjct: 473 DQKARKSKERADL-LAKLDNSLTHEQIEGWRR 503
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,214,968
Number of Sequences: 5004
Number of extensions: 66898
Number of successful extensions: 325
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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