Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_M02
         (877 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0754 - 21256860-21257702                                         34   0.13 
08_01_0515 - 4490855-4490902,4490992-4491072,4491752-4491823,449...    28   8.5  

>07_03_0754 - 21256860-21257702
          Length = 280

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 41/155 (26%), Positives = 66/155 (42%), Gaps = 6/155 (3%)
 Frame = +3

Query: 207 KVSLSGTALSFLLYECVNSGCSQEGFLVG--DITSQITNHISDSQSDNARLDTQIVIRTV 380
           K+S+SG AL+ LL  C  +    +G L G    T      +SD   D+A   +   I   
Sbjct: 13  KISISGAALAALLQRCGMADGDCDGLLSGRASTTPAPPPSLSD-YDDHAPAQSAPAISLS 71

Query: 381 L----PLPSVSLFYFPTGRIKEEVLSELLSNTAKEIVGWYKYRKNTNIKPTFRDKLIAKG 548
           +     L   S    P GR      S   +  A   +G++  R+ T ++P+ R+  +A  
Sbjct: 72  ISGHSSLSRPSSLSDPLGRFHPSA-SAAAAGPAS--IGFFSSRRRTALRPSMRELSLAHS 128

Query: 549 LQKYFEKYHGKKTFVTCNLTNRTSSAASTHTFTYR 653
           L K     H    F+   L + +S   STH++ +R
Sbjct: 129 LSKSLALAH-PLLFL---LVSPSSPNLSTHSYDHR 159


>08_01_0515 -
           4490855-4490902,4490992-4491072,4491752-4491823,
           4492296-4492373,4493316-4493444,4493862-4493942,
           4494064-4494205,4494672-4494865,4494962-4495027,
           4495108-4495194,4495326-4495376
          Length = 342

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 252 CVNSGCSQEGFLVGDITSQI-TNHISDSQ 335
           C+ +   Q+GFLVG I  ++  +HI DSQ
Sbjct: 196 CLAAFPDQQGFLVGSIEGRVGVHHIDDSQ 224


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,996,012
Number of Sequences: 37544
Number of extensions: 344916
Number of successful extensions: 704
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)