Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_M02
         (877 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77135-1|CAB00876.1|  362|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U80030-3|AAG24160.2|  367|Caenorhabditis elegans Serpentine rece...    31   1.1  
Z46787-3|CAA86741.1| 1032|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U53342-1|AAA96213.2|  371|Caenorhabditis elegans Suppressor of a...    29   5.8  
AF022985-15|AAB69969.2|  435|Caenorhabditis elegans Hypothetical...    29   5.8  

>Z77135-1|CAB00876.1|  362|Caenorhabditis elegans Hypothetical
           protein T16A9.2 protein.
          Length = 362

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/46 (41%), Positives = 29/46 (63%)
 Frame = +3

Query: 282 FLVGDITSQITNHISDSQSDNARLDTQIVIRTVLPLPSVSLFYFPT 419
           F V  ++S  T+H S S++  A+L   +VI+TV+P   V L +FPT
Sbjct: 225 FEVKKLSSIATSHSSASKTLQAQLFYSLVIQTVIP---VILIHFPT 267


>U80030-3|AAG24160.2|  367|Caenorhabditis elegans Serpentine
           receptor, class w protein115 protein.
          Length = 367

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -1

Query: 265 PEFTHSYNKNDSAVPLSDTF-SV*AISILRTKFNYYFYDCYITQQLSLYMVNCLM 104
           P  T S N   +A+ L D   S+  I +L  +++Y F+DCY T    L +   L+
Sbjct: 64  PMRTSSINILMAAIALFDILASLQQIELLLDRYSYIFFDCYPTYTYGLELTKVLL 118


>Z46787-3|CAA86741.1| 1032|Caenorhabditis elegans Hypothetical
           protein C16C10.3 protein.
          Length = 1032

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
 Frame = +3

Query: 210 VSLSGTALSFLLYECVNSGCSQEGFLVGDITSQITNHISDSQSDNARLDTQIVIR---TV 380
           V  SG +  FL Y+C  +    EG   GD   ++T  I D   +  +  +++  R   + 
Sbjct: 130 VKFSGKSHHFLAYDCAATLYLPEGVYTGDDQEEVTLTIDDFPKEEWKFVSKLSRRKDDSY 189

Query: 381 LPLPSVSLFYFPTGRIKEEVLSELLSNTAKEIV 479
           L +   + F +  G + +E  + +      EIV
Sbjct: 190 LVVLKPAGFVYTQGEVAQEEANRMELTRIIEIV 222


>U53342-1|AAA96213.2|  371|Caenorhabditis elegans Suppressor of
           activated let-60ras protein 7, isoform b protein.
          Length = 371

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 313 PITYQTLKVIMQGLILKSLLELYYRCLRCHF 405
           PI Y TL +    L++K++  + Y  L  HF
Sbjct: 151 PIAYHTLYLSTADLVIKAIFSVIYNALSIHF 181


>AF022985-15|AAB69969.2|  435|Caenorhabditis elegans Hypothetical
           protein T15B7.16 protein.
          Length = 435

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 575 WEENICNLQSNKQNIFCCINPHIYLQIWKN 664
           W  N+C + S K  I     P+I+L I+ N
Sbjct: 116 WTPNVCFVNSKKTEIHSSPTPNIFLMIYPN 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,780,092
Number of Sequences: 27780
Number of extensions: 363183
Number of successful extensions: 919
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)