Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_M01
(887 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 155 1e-38
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 29 0.88
SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subu... 28 2.0
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 28 2.0
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ... 28 2.0
SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subun... 28 2.0
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.6
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 27 4.7
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb... 26 6.2
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 8.2
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 155 bits (375), Expect = 1e-38
Identities = 73/170 (42%), Positives = 108/170 (63%)
Frame = +2
Query: 353 DYSITAGSKICVVTAGVRQREGESRLDLVQRNTDVLKQIIPQLIKYSPDTILVIASNPVD 532
DY + V+TAG Q+ GE+R+DL++ N + K+I+ ++ KY+ D IL++A+NPVD
Sbjct: 81 DYKDCKDATAVVITAGKNQKPGETRMDLLKANISIFKEILREVTKYTKDAILLVATNPVD 140
Query: 533 ILTYVTWKISGLPKHRVIGSGTNLDSARFRYLLSDRLGIATTSCHGYIIGEHGDSSVPVW 712
+LTY T K++G P RVIGSGT +D+ARF+YL+ G+ S + IIGEHGDS + VW
Sbjct: 141 VLTYATLKLTGFPAERVIGSGTIIDTARFQYLIGKLYGLDPQSVNADIIGEHGDSELAVW 200
Query: 713 SAVNIAGVRLSDLNNQIGTDDDPENWKELHENVVKSAYXVIKLKGYTSXG 862
S +IAG+ L+D + T D + E + +AY +I+ KG T G
Sbjct: 201 SHASIAGLSLADFCEESETKYDEQALNECFKETKNAAYDIIQRKGSTEYG 250
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 29.1 bits (62), Expect = 0.88
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = +3
Query: 282 ERXXDGPAARISIHEETPRSNLVRIIL*QLARRSAWLLLVFDNAKVNLVSIS 437
E DGP+ R +HE +S+L++ ++ +R L +D ++V ++ +S
Sbjct: 226 ENYEDGPSFRSMLHELEQKSSLMKYYCKKIMKRIVQLSDAYDASQVAVMKLS 277
>SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subunit
Rpn502|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 27.9 bits (59), Expect = 2.0
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 773 DDPENWKELHENVV 814
+DPE WKE+ ENVV
Sbjct: 246 EDPEKWKEILENVV 259
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 722 NIAGVRLSDLNNQIGTDDDPENWKELHENV 811
NI G LSD NNQ DD + +EL +++
Sbjct: 339 NIEGFNLSDSNNQKVQDDQQQQLEELFKDL 368
>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/48 (25%), Positives = 21/48 (43%)
Frame = -2
Query: 565 PANLPRNIRQNIHGVTGDHQYCVRTVLYQLRDYLFKHIGVSLHEIETR 422
P LPR ++ +HG GD Y R + +F + +E++
Sbjct: 56 PLELPRKLKVYLHGPPGDGIYVAREEFEEYIRPIFNAAAIEFETVESK 103
>SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subunit
Rpn501|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 27.9 bits (59), Expect = 2.0
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 773 DDPENWKELHENVV 814
+DPE WKE+ ENVV
Sbjct: 246 EDPEKWKEILENVV 259
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1073
Score = 27.1 bits (57), Expect = 3.6
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +2
Query: 458 LKQIIPQLIKYSPDTILVIASNPVDILTYVTWKISGLPKHRVIGSGTNLDSARFRYLLSD 637
L I L K + ++I+SN + YVT + G+P +V + + D SD
Sbjct: 611 LPHSISYLRKSNRAVYVLISSNSTLLTVYVTLTLEGVPDFKVYSNPISTDLPLTLQSPSD 670
Query: 638 RLG-IATTSCHGYIIGEHGDSSVPVWSAV 721
I S + YI+G ++ P + +
Sbjct: 671 EFSTIYAWSDYLYIVGIDMETEQPTLNQI 699
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 650 ATTSCHGYIIGEHGDSSVPVWS 715
+ TSCHGY+I D V +W+
Sbjct: 1194 SVTSCHGYLIA-FNDEFVEIWN 1214
>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 519
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +3
Query: 243 ASHRSXSHXGXQIERXXDGPAARISIHEETPRSNLVRIIL*QLARRSAWLLLV 401
A HRS + ++E + PA+ SI +T +N+ L +R+ + L++
Sbjct: 5 AHHRSITRQDIELEDLENAPASIASIENDTLEANVGSTPLTAKQKRNIYFLIL 57
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 504 IVSGLYFISCGIICLSTSVFLCTRSRRDSPSRCRTPAVTT 385
I+ G+ ++SC C + S ++C+ SP+ T TT
Sbjct: 901 IIDGVDYLSCNGACYNPSQYVCSDGSL-SPNTVTTTKATT 939
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,013,392
Number of Sequences: 5004
Number of extensions: 55356
Number of successful extensions: 157
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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