Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_M01
(887 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0042 + 295608-296222,298479-298925 189 2e-48
06_01_0033 - 346273-347355 177 7e-45
01_06_0072 + 26184592-26184828,26184934-26185107,26185591-261857... 56 4e-08
05_07_0204 - 28397597-28397737,28398225-28398342,28399215-283993... 53 4e-07
03_06_0127 - 31872840-31872912,31873021-31873115,31873199-318732... 49 6e-06
04_04_0724 + 27578337-27578371,27578492-27578607,27578717-275788... 38 0.008
08_01_0567 - 5040389-5040631,5042124-5042264 34 0.13
02_05_1331 + 35736543-35736638,35737407-35737525,35737670-357377... 31 1.6
03_05_0327 - 23154014-23154942,23155169-23155316,23155606-231566... 29 3.7
08_02_0849 - 21841470-21841883,21843748-21843813,21844768-218449... 29 4.9
10_08_0925 + 21604871-21605021,21605562-21605881,21606899-216078... 29 6.5
07_03_1721 - 29023979-29025295 29 6.5
03_02_0789 + 11207769-11208059,11208370-11208557,11208701-112097... 28 8.6
>02_01_0042 + 295608-296222,298479-298925
Length = 353
Score = 189 bits (461), Expect = 2e-48
Identities = 87/174 (50%), Positives = 123/174 (70%)
Frame = +2
Query: 335 KIQSSTDYSITAGSKICVVTAGVRQREGESRLDLVQRNTDVLKQIIPQLIKYSPDTILVI 514
++ S TD ++T GS + +VTAG RQ GESRL+L+QRN + ++I+P L ++SP+ +L+I
Sbjct: 95 RLVSDTDLAVTRGSDLAIVTAGARQIPGESRLNLLQRNVALFRKIVPALAEHSPEALLLI 154
Query: 515 ASNPVDILTYVTWKISGLPKHRVIGSGTNLDSARFRYLLSDRLGIATTSCHGYIIGEHGD 694
SNPVD+LTYV WK+SG P RVIGSGTNLDS+RFR+LL++ L + Y++GEHGD
Sbjct: 155 VSNPVDVLTYVAWKLSGFPASRVIGSGTNLDSSRFRFLLAEHLQVNAQDVQAYMVGEHGD 214
Query: 695 SSVPVWSAVNIAGVRLSDLNNQIGTDDDPENWKELHENVVKSAYXVIKLKGYTS 856
SSV +WS++++AG+ + + D E + + VV SAY VI LKGYTS
Sbjct: 215 SSVAIWSSMSVAGMPVLKSLRESHQSFDEEALEGIRRAVVDSAYEVISLKGYTS 268
Score = 35.5 bits (78), Expect = 0.057
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +1
Query: 205 LAAAFSXLTQHVTHHIALVAMXAXKLKGXXMDLQHGSAFM 324
+A A + LT+ + IALV KL+G +DLQH +AF+
Sbjct: 52 MAIAQTILTRDMADEIALVDAVPDKLRGEMLDLQHAAAFL 91
>06_01_0033 - 346273-347355
Length = 360
Score = 177 bits (432), Expect = 7e-45
Identities = 87/179 (48%), Positives = 123/179 (68%), Gaps = 6/179 (3%)
Frame = +2
Query: 338 IQSSTDYSITAGSKICVVTAGVRQREGESRLDLVQRNTDVLKQIIPQLIKYSPDTILVIA 517
I S T+ S+T S + +VTAG RQ GE+RL+L+QRN + ++I+P + SP+++LVI
Sbjct: 95 IVSGTEVSLTRSSDLVIVTAGARQIPGETRLNLLQRNVSLFRKIVPAAAEASPESVLVIV 154
Query: 518 SNPVDILTYVTWKISGLPKHRVIGSGTNLDSARFRYLLSDRLGIATTSCHGYIIGEHGDS 697
SNPVD+LTYV WK+SG P RVIGSGTNLDS+RFR+LL++ L ++ Y++GEHGDS
Sbjct: 155 SNPVDVLTYVAWKLSGFPASRVIGSGTNLDSSRFRFLLAEHLEVSAQDVQAYMVGEHGDS 214
Query: 698 SVPVWSAVNIAGVR-LSDLNNQIGTDDDPENWKE-----LHENVVKSAYXVIKLKGYTS 856
SV +WS++++ G+ L+ L + + + E + VV SAY VIKLKGYTS
Sbjct: 215 SVALWSSISVGGMPVLAHLQKNHRSAATAKKFDEAALEGIRRAVVGSAYEVIKLKGYTS 273
Score = 35.9 bits (79), Expect = 0.043
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +1
Query: 205 LAAAFSXLTQHVTHHIALVAMXAXKLKGXXMDLQHGSAFM 324
+A A + LTQ + I L+ A K++G +DLQH +AF+
Sbjct: 51 MAIAQTILTQDLADEIVLIDAVADKVRGEMLDLQHAAAFL 90
>01_06_0072 +
26184592-26184828,26184934-26185107,26185591-26185759,
26185863-26185924,26186506-26186630,26186735-26186852,
26187760-26187897
Length = 340
Score = 56.0 bits (129), Expect = 4e-08
Identities = 35/130 (26%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Frame = +2
Query: 371 GSKICVVTAGVRQREGESRLDLVQRNTDVLKQIIPQLIKYSPDTILVIASNPVDILTYV- 547
GS I ++ AGV ++ G +R DL N ++K + + KY P+ ++ + SNPV+ +
Sbjct: 95 GSDIVIIPAGVPRKPGMTRDDLFNINAGIVKNLCTAIAKYCPNALVNMISNPVNSTVPIA 154
Query: 548 --TWKISGLPKHRVIGSGTNLDSARFRYLLSDRLGIATTSCHGYIIGEH-GDSSVPVWSA 718
+K +G + + T LD R + + + + T + ++G H G + +P++S
Sbjct: 155 AEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVTDVNVPVVGGHAGITILPLFSQ 214
Query: 719 VNIAGVRLSD 748
A LSD
Sbjct: 215 ATPATNALSD 224
>05_07_0204 -
28397597-28397737,28398225-28398342,28399215-28399339,
28399683-28399744,28399867-28400035,28400594-28400767,
28400856-28401089
Length = 340
Score = 52.8 bits (121), Expect = 4e-07
Identities = 33/129 (25%), Positives = 64/129 (49%), Gaps = 4/129 (3%)
Frame = +2
Query: 371 GSKICVVTAGVRQREGESRLDLVQRNTDVLKQIIPQLIKYSPDTILVIASNPVDILTYV- 547
GS + ++ AGV ++ G +R DL N ++K + + KY P+ ++ + SNPV+ +
Sbjct: 94 GSDVVIIPAGVPRKPGMTRDDLFNINAGIVKGLCTAISKYCPNALVNMISNPVNSTVPIA 153
Query: 548 --TWKISGLPKHRVIGSGTNLDSARFRYLLSDRLGIATTSCHGYIIGEH-GDSSVPVWSA 718
+K +G + + T LD R + + + + T + ++G H G + +P++S
Sbjct: 154 AEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVTEVNVPVVGGHAGITILPLFSQ 213
Query: 719 VNIAGVRLS 745
A LS
Sbjct: 214 ATPASNALS 222
>03_06_0127 -
31872840-31872912,31873021-31873115,31873199-31873288,
31873364-31873399,31874039-31874122,31874223-31874312,
31874426-31874740,31875674-31875883,31875965-31876036
Length = 354
Score = 48.8 bits (111), Expect = 6e-06
Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 5/123 (4%)
Frame = +2
Query: 371 GSKICVVTAGVRQREGESRLDLVQRNTDVLKQIIPQLIKYSPDTILVIASNPVD----IL 538
G + ++ AG+ ++ G +R DL +N +++ + + K P+ I+ + SNPV+ I
Sbjct: 110 GMDLVIIPAGLPRKPGMTRDDLFNKNAGIVRSLCEGVAKCCPNAIVNLISNPVNSTVPIA 169
Query: 539 TYVTWKISGLPKHRVIGSGTNLDSARFRYLLSDRLGIATTSCHGYIIGEH-GDSSVPVWS 715
V K R++G T LD AR +++ LGI + ++G H G + +P+ S
Sbjct: 170 AEVFKKAGTYDPKRLLGV-TTLDVARANTFVAEVLGIDPKDVNVPVVGGHAGVTILPLLS 228
Query: 716 AVN 724
V+
Sbjct: 229 QVH 231
>04_04_0724 +
27578337-27578371,27578492-27578607,27578717-27578875,
27578954-27579129,27580406-27580683,27580759-27580894,
27580984-27581095,27581177-27581268
Length = 367
Score = 38.3 bits (85), Expect = 0.008
Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 2/125 (1%)
Frame = +2
Query: 338 IQSSTDYSITAGSKICVVTAGVRQREGESRLDLVQRNTDVLKQIIPQLIKY-SPDTILVI 514
+ +S + G + +V G +R+G R DL+ +N + K L ++ +P+ +++
Sbjct: 106 VATSDEAEAFKGVNVAIVIGGWPRRDGMERKDLISKNVTIYKSQASALHQHAAPNCKVLV 165
Query: 515 ASNPVDILTYVTWKISGLPKHRVIGSGTNLDSARFRYLLSDRLGIATTSCHGYII-GEHG 691
+NP + V + + + I T LD R ++++L + II G H
Sbjct: 166 VANPANTNALVLKEFAPAIPAKNITCLTRLDHNRALGQVAEKLNVHVGDVKNAIIWGNHS 225
Query: 692 DSSVP 706
+ P
Sbjct: 226 STQFP 230
>08_01_0567 - 5040389-5040631,5042124-5042264
Length = 127
Score = 34.3 bits (75), Expect = 0.13
Identities = 18/46 (39%), Positives = 31/46 (67%), Gaps = 4/46 (8%)
Frame = +2
Query: 422 SRLDLVQRN--TDVLKQIIPQLIKYSPDTILVIASNPV--DILTYV 547
++L+L++ N +L +I+P L + SP+ LV+ S+P D+LTYV
Sbjct: 3 TKLELMRSNYLKKLLTEIVPALAENSPEAALVVVSDPPVDDVLTYV 48
>02_05_1331 +
35736543-35736638,35737407-35737525,35737670-35737715,
35738117-35738172,35738452-35738547,35738844-35738961,
35739406-35739672,35740023-35740124,35740302-35740659,
35740750-35740863,35741045-35741676,35741895-35742103,
35742597-35742819,35743419-35743538,35743888-35743914,
35744281-35745045,35745431-35748511
Length = 2142
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 502 CVRTVLYQLRDYLFKHIGVSLHEIETRFTFALSNTSSNHADLRASCY 362
CVR + +LRDY G S ++E F + N D+ SCY
Sbjct: 630 CVRALKNELRDYSANEWGDSKLKLEPEPIFIIDIIEENGEDIVQSCY 676
>03_05_0327 -
23154014-23154942,23155169-23155316,23155606-23156622,
23156753-23157217,23160258-23161247
Length = 1182
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +2
Query: 452 DVLKQIIPQLIKYSPDTILVIASNPVDILTYVTWKISGLPKHRVIGSGTNLDS 610
++LK ++P+L D L + S+ VD+L + + ++V+G GT L S
Sbjct: 444 EILKVLLPRLSDMVSDPALSVRSSAVDLLLAIR-DLRSFQFNKVVGLGTLLSS 495
>08_02_0849 -
21841470-21841883,21843748-21843813,21844768-21844951,
21845427-21847468,21848544-21848870
Length = 1010
Score = 29.1 bits (62), Expect = 4.9
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Frame = +2
Query: 512 IASNPVDILTYVTWKISGLPKHRVIGSGTNLDSARFRYLLSDRLGIATTSCHGYIIGEHG 691
I SNP +I T TW +S + + + ++D + S + G + G + G
Sbjct: 383 IESNPSEIKTVDTWPVSSMESSNNV-TDNSVDDWQAFTSSSGQGGNSVKPIEGSAASQGG 441
Query: 692 DSSVPVWSAVNIAGVRLSDLNN----QIGTDDDPENWKELHE 805
D PV +I+ S+ N+ +G ++ N K ++E
Sbjct: 442 DVVKPVGQTASISFEHFSEANSVELWPVGNINELHNTKVVNE 483
>10_08_0925 +
21604871-21605021,21605562-21605881,21606899-21607897,
21608085-21608126,21608190-21608249,21608915-21608959
Length = 538
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -3
Query: 561 LIFHVTYVRISTGLLAITNIVSGLYFISCGIICLST 454
++F +T+V T L + I SG +F G ICL T
Sbjct: 435 VVFLMTFVIGQTFLAVLCRIKSGTFFFFAGWICLMT 470
>07_03_1721 - 29023979-29025295
Length = 438
Score = 28.7 bits (61), Expect = 6.5
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 539 SEYPRGYWRSPILCPDCTLSAA 474
S +P G W SP + P+C++SA+
Sbjct: 312 SPWPNGAWSSPWIQPNCSVSAS 333
>03_02_0789 +
11207769-11208059,11208370-11208557,11208701-11209785,
11210163-11210288,11210367-11210605,11210688-11210806,
11210894-11211014
Length = 722
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2
Query: 449 TDVLKQIIPQLIKYSPDTILVIASNPVDILTYVTWKISGLPKHRVIG 589
TDVL ++ +++K PD LV+ S ++ + T+ SG P +V G
Sbjct: 195 TDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQTY-FSGAPLMKVPG 240
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,481,736
Number of Sequences: 37544
Number of extensions: 425570
Number of successful extensions: 1180
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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