Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_M01
(887 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49127-1|CAA88944.1| 333|Caenorhabditis elegans Hypothetical pr... 266 1e-71
U15420-1|AAA67063.1| 333|Caenorhabditis elegans lactate dehydro... 266 1e-71
L43563-1|AAC41613.1| 333|Caenorhabditis elegans L-lactate dehyd... 266 1e-71
AF067950-4|AAG24157.1| 351|Caenorhabditis elegans Serpentine re... 29 3.4
Z92834-12|CAB07392.5| 424|Caenorhabditis elegans Hypothetical p... 28 7.8
Z81569-2|CAB04602.4| 424|Caenorhabditis elegans Hypothetical pr... 28 7.8
AL132943-6|CAC14393.1| 511|Caenorhabditis elegans Hypothetical ... 28 7.8
>Z49127-1|CAA88944.1| 333|Caenorhabditis elegans Hypothetical
protein F13D12.2 protein.
Length = 333
Score = 266 bits (652), Expect = 1e-71
Identities = 120/174 (68%), Positives = 147/174 (84%), Gaps = 1/174 (0%)
Frame = +2
Query: 338 IQSSTDYSITAGSKICVVTAGVRQREGESRLDLVQRNTDVLKQIIPQLIKYSPDTILVIA 517
+++ TDYSITAGSK+CVVTAG RQREGE+RL LVQRN ++ K IIPQL+KYSPDT +++
Sbjct: 77 VKADTDYSITAGSKLCVVTAGARQREGETRLSLVQRNVEIFKGIIPQLVKYSPDTCILVV 136
Query: 518 SNPVDILTYVTWKISGLPKHRVIGSGTNLDSARFRYLLSDRLGIATTSCHGYIIGEHGDS 697
SNPVD+LTYVTWK+SGLP+ RV GSGTNLDSARFR+LLS++L IA +SCHG+IIGEHGDS
Sbjct: 137 SNPVDVLTYVTWKLSGLPRERVFGSGTNLDSARFRFLLSEKLNIAPSSCHGWIIGEHGDS 196
Query: 698 SVPVWSAVNIAGVRLSDLNNQIGTDDDPENWK-ELHENVVKSAYXVIKLKGYTS 856
SV VWS VN+AGV L ++ IG D E+W+ E+H+ VV SAY +IKLKGYTS
Sbjct: 197 SVAVWSGVNVAGVTLHEIKPDIGEKTDNEHWEAEIHKKVVDSAYEIIKLKGYTS 250
Score = 45.2 bits (102), Expect = 6e-05
Identities = 21/41 (51%), Positives = 28/41 (68%)
Frame = +1
Query: 205 LAAAFSXLTQHVTHHIALVAMXAXKLKGXXMDLQHGSAFMR 327
+A A+S L Q++ + + LV + A KLKG MDLQHG AF R
Sbjct: 33 MACAYSILQQNLANELCLVDVVADKLKGEMMDLQHGLAFTR 73
>U15420-1|AAA67063.1| 333|Caenorhabditis elegans lactate
dehydrogenase protein.
Length = 333
Score = 266 bits (652), Expect = 1e-71
Identities = 120/174 (68%), Positives = 147/174 (84%), Gaps = 1/174 (0%)
Frame = +2
Query: 338 IQSSTDYSITAGSKICVVTAGVRQREGESRLDLVQRNTDVLKQIIPQLIKYSPDTILVIA 517
+++ TDYSITAGSK+CVVTAG RQREGE+RL LVQRN ++ K IIPQL+KYSPDT +++
Sbjct: 77 VKADTDYSITAGSKLCVVTAGARQREGETRLSLVQRNVEIFKGIIPQLVKYSPDTCILVV 136
Query: 518 SNPVDILTYVTWKISGLPKHRVIGSGTNLDSARFRYLLSDRLGIATTSCHGYIIGEHGDS 697
SNPVD+LTYVTWK+SGLP+ RV GSGTNLDSARFR+LLS++L IA +SCHG+IIGEHGDS
Sbjct: 137 SNPVDVLTYVTWKLSGLPRERVFGSGTNLDSARFRFLLSEKLNIAPSSCHGWIIGEHGDS 196
Query: 698 SVPVWSAVNIAGVRLSDLNNQIGTDDDPENWK-ELHENVVKSAYXVIKLKGYTS 856
SV VWS VN+AGV L ++ IG D E+W+ E+H+ VV SAY +IKLKGYTS
Sbjct: 197 SVAVWSGVNVAGVTLHEIKPDIGEKTDNEHWEAEIHKKVVDSAYEIIKLKGYTS 250
Score = 45.2 bits (102), Expect = 6e-05
Identities = 21/41 (51%), Positives = 28/41 (68%)
Frame = +1
Query: 205 LAAAFSXLTQHVTHHIALVAMXAXKLKGXXMDLQHGSAFMR 327
+A A+S L Q++ + + LV + A KLKG MDLQHG AF R
Sbjct: 33 MACAYSILQQNLANELCLVDVVADKLKGEMMDLQHGLAFTR 73
>L43563-1|AAC41613.1| 333|Caenorhabditis elegans L-lactate
dehydrogenase protein.
Length = 333
Score = 266 bits (652), Expect = 1e-71
Identities = 120/174 (68%), Positives = 147/174 (84%), Gaps = 1/174 (0%)
Frame = +2
Query: 338 IQSSTDYSITAGSKICVVTAGVRQREGESRLDLVQRNTDVLKQIIPQLIKYSPDTILVIA 517
+++ TDYSITAGSK+CVVTAG RQREGE+RL LVQRN ++ K IIPQL+KYSPDT +++
Sbjct: 77 VKADTDYSITAGSKLCVVTAGARQREGETRLSLVQRNVEIFKGIIPQLVKYSPDTCILVV 136
Query: 518 SNPVDILTYVTWKISGLPKHRVIGSGTNLDSARFRYLLSDRLGIATTSCHGYIIGEHGDS 697
SNPVD+LTYVTWK+SGLP+ RV GSGTNLDSARFR+LLS++L IA +SCHG+IIGEHGDS
Sbjct: 137 SNPVDVLTYVTWKLSGLPRERVFGSGTNLDSARFRFLLSEKLNIAPSSCHGWIIGEHGDS 196
Query: 698 SVPVWSAVNIAGVRLSDLNNQIGTDDDPENWK-ELHENVVKSAYXVIKLKGYTS 856
SV VWS VN+AGV L ++ IG D E+W+ E+H+ VV SAY +IKLKGYTS
Sbjct: 197 SVAVWSGVNVAGVTLHEIKPDIGEKTDNEHWEAEIHKKVVDSAYEIIKLKGYTS 250
Score = 45.2 bits (102), Expect = 6e-05
Identities = 21/41 (51%), Positives = 28/41 (68%)
Frame = +1
Query: 205 LAAAFSXLTQHVTHHIALVAMXAXKLKGXXMDLQHGSAFMR 327
+A A+S L Q++ + + LV + A KLKG MDLQHG AF R
Sbjct: 33 MACAYSILQQNLANELCLVDVVADKLKGEMMDLQHGLAFTR 73
>AF067950-4|AAG24157.1| 351|Caenorhabditis elegans Serpentine
receptor, class h protein87 protein.
Length = 351
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = -3
Query: 591 DPMTRCLGSPLIFHVTYVRISTGLLAI----TNIVSGLYFISCGIICLSTSVFLCTRS 430
D CLG+P IF T S GLL I + L F S + LST++ + R+
Sbjct: 76 DVFLNCLGTPYIFLPTLTGFSVGLLNFLGVPPKIQAWLAFQSLNFMLLSTTILVENRN 133
>Z92834-12|CAB07392.5| 424|Caenorhabditis elegans Hypothetical
protein K11B4.1 protein.
Length = 424
Score = 28.3 bits (60), Expect = 7.8
Identities = 9/22 (40%), Positives = 18/22 (81%)
Frame = +2
Query: 467 IIPQLIKYSPDTILVIASNPVD 532
I+ L+KY P+TI+ +A++P++
Sbjct: 112 IVRLLLKYQPETIITLANDPIN 133
>Z81569-2|CAB04602.4| 424|Caenorhabditis elegans Hypothetical
protein K11B4.1 protein.
Length = 424
Score = 28.3 bits (60), Expect = 7.8
Identities = 9/22 (40%), Positives = 18/22 (81%)
Frame = +2
Query: 467 IIPQLIKYSPDTILVIASNPVD 532
I+ L+KY P+TI+ +A++P++
Sbjct: 112 IVRLLLKYQPETIITLANDPIN 133
>AL132943-6|CAC14393.1| 511|Caenorhabditis elegans Hypothetical
protein Y116F11B.11 protein.
Length = 511
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +2
Query: 683 EHGDSSVPVWSAVNIAGVRLSDLNNQIGTDDDPENWKELHENVVKSAYXVIKLKGYTS 856
E+ ++ VP VN +L +LN + +D + + E E ++KSAY + G+ S
Sbjct: 23 EYINNIVPELDIVNNCLKKLLELNGKTLSDVEKQEAMETAETMLKSAYHGLLYAGFKS 80
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,113,441
Number of Sequences: 27780
Number of extensions: 327652
Number of successful extensions: 916
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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