Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_L24
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.17 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.6  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    27   3.6  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = -1

Query: 668 GGGKXXPPPXXXGXGXFXGGKGXGXXKKXPXXXGGG 561
           GGG   PPP   G G F G  G G         GGG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229



 Score = 29.1 bits (62), Expect = 0.89
 Identities = 24/81 (29%), Positives = 25/81 (30%)
 Frame = -1

Query: 797 GGXXKXPPXXGXFWVLGPFGAXXXKXFXXGFPXFLGKXXXXPXGGGKXXPPPXXXGXGXF 618
           GG    PP  G F   G FG         G   F G       G G     P   G G  
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEG--HHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLG 252

Query: 617 XGGKGXGXXKKXPXXXGGGGF 555
             G G G     P   GG G+
Sbjct: 253 GFGGGPGGFGGGPGGHGGPGW 273



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = -3

Query: 669 GGGKXXPPPPXPGXXGFXGGXGXXXPKKXXXXPGGG 562
           GGG   PPP   G  GF G  G           GGG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +2

Query: 560 PPPPGXXXFFXGXXXPXPPKXPXXPGXGGGGXXFPPP 670
           PPPP       G   P PP  P     GG     P P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = +1

Query: 553 KXPPPPXXXGXFFXXPXPXPPXKXPXPXXWGGGXXFPPPXG 675
           K PPPP         P P P    P     GG    PPP G
Sbjct: 730 KSPPPPPP-AVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = +2

Query: 593 GXXXPXPPKXPXXPGXGGGGXXFPPPXGXXXFSPKXGG 706
           G   P PP     PG G GG     P G   F    GG
Sbjct: 72  GNAAPPPPGAEGGPGAGFGGFPGAGPGGARTFHFNMGG 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,344,152
Number of Sequences: 5004
Number of extensions: 16268
Number of successful extensions: 49
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)