Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_L24
(893 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0009 + 22134160-22134696 37 0.019
02_05_0686 - 30900748-30902167,30903442-30904742 33 0.40
11_02_0065 - 7938007-7938393,7939292-7939435,7940597-7940665,794... 32 0.54
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 31 1.2
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 31 1.2
07_03_1136 + 24218601-24218734,24218769-24219906 31 1.6
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 31 1.6
05_01_0142 - 940421-940701,941262-941574 30 2.2
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 30 2.2
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 30 2.9
01_03_0005 + 11568545-11569119,11569179-11569191 30 2.9
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 3.8
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 29 5.0
08_02_0186 + 13965960-13966424 29 6.6
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 29 6.6
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 8.7
07_01_0974 + 8211602-8212051 28 8.7
03_02_0178 + 6195402-6199158,6199438-6200003 28 8.7
>04_04_0009 + 22134160-22134696
Length = 178
Score = 37.1 bits (82), Expect = 0.019
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -3
Query: 669 GGGKXXPPPPXPGXXGFXGGXGXXXPKKXXXXPGGGG 559
GGG PPPP P G GG G ++ GGGG
Sbjct: 58 GGGSTAPPPPPPSSSGKSGGGGGSNIREAAASGGGGG 94
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = -1
Query: 668 GGGKXXPPPXXXGXGXFXGGKGXGXXKKXPXXXGGGG 558
GGG PPP GG G ++ GGGG
Sbjct: 58 GGGSTAPPPPPPSSSGKSGGGGGSNIREAAASGGGGG 94
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 32.7 bits (71), Expect = 0.40
Identities = 22/58 (37%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Frame = +2
Query: 554 KXPPPPGXXXFFXGXXXPXPPKXPXXP-----GXGGGGXXFPPPXGXXXFSPKXGGNP 712
K PPPP G P PPK P P G GG PPP G P G P
Sbjct: 342 KGPPPPPPAK---GPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRPPAAPGVP 396
Score = 32.3 bits (70), Expect = 0.54
Identities = 26/80 (32%), Positives = 26/80 (32%)
Frame = +1
Query: 559 PPPPXXXGXFFXXPXPXPPXKXPXPXXWGGGXXFPPPXGXXXXFPKXWGKPXXKXFXXXA 738
PPPP P P PP K P PPP G P G P
Sbjct: 313 PPPPPPPKPAAAAPPPPPPPKAAPPP--------PPPKGPPPP-PPAKGPP-----PPPP 358
Query: 739 PKGPKTQKXPXLGGFXXXPP 798
PKGP P GG PP
Sbjct: 359 PKGPSPPPPPPPGGKKGGPP 378
Score = 29.9 bits (64), Expect = 2.9
Identities = 21/73 (28%), Positives = 23/73 (31%)
Frame = +3
Query: 561 PPPXGXGXFFXGPXPLXPXKXPXPXXXGGGXGFSPPXXGXXXFPQKXGETPXKXFXXXGP 740
PPP P P P K P G PP G P G +P G
Sbjct: 314 PPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPP-PPPGG 372
Query: 741 KRAQNPKXAPXGG 779
K+ P P GG
Sbjct: 373 KKGGPPPPPPKGG 385
>11_02_0065 -
7938007-7938393,7939292-7939435,7940597-7940665,
7940762-7940809,7941488-7941584,7941688-7941767,
7941841-7941912,7942256-7942350,7943903-7943984,
7945176-7945209,7945255-7945262,7945657-7946058
Length = 505
Score = 32.3 bits (70), Expect = 0.54
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +2
Query: 563 PPPGXXXFFXGXXXPXPPKXPXXPGXGGGGXXFPP 667
PPP FF P PP P GGGG P
Sbjct: 67 PPPPPAAFFAAVPPPPPPPFEYYPAVGGGGGFGAP 101
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/65 (30%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
Frame = -3
Query: 705 PPXFGEXXXXPXGGGKXXPPPPXPGXXGFXGG----XGXXXPKKXXXXPGGGGXFXXXKN 538
P F P G PPPP P G GG G P PGG +
Sbjct: 1166 PAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPPPPGGRG 1225
Query: 537 XPXPP 523
P PP
Sbjct: 1226 LPAPP 1230
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/49 (32%), Positives = 16/49 (32%)
Frame = +2
Query: 560 PPPPGXXXFFXGXXXPXPPKXPXXPGXGGGGXXFPPPXGXXXFSPKXGG 706
PPPP P PP P P G PPP G GG
Sbjct: 1184 PPPPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPPPPGGRGLPAPPGG 1232
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 31.1 bits (67), Expect = 1.2
Identities = 22/68 (32%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Frame = +3
Query: 573 GXGXFFXGPXP-LXPXKXPXPXXXGGGXGFSPPXXGXXXFPQKXGETPXKXFXXXGPK-R 746
G F GP P P P P G PP G P K G P GPK +
Sbjct: 149 GDKCFHHGPKPGPKPKPKPSPPKPKPGPKPKPPKPGPKPKPPKPGPKPKPKPPKPGPKPK 208
Query: 747 AQNPKXAP 770
+ PK P
Sbjct: 209 PKPPKPGP 216
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/51 (39%), Positives = 20/51 (39%)
Frame = -3
Query: 711 GFPPXFGEXXXXPXGGGKXXPPPPXPGXXGFXGGXGXXXPKKXXXXPGGGG 559
G P G P GGG PP P G GG G P PGGGG
Sbjct: 96 GAPGPLGGGGARPPGGGGGGGPPSLP--PGAGGGGGARPP-----APGGGG 139
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Frame = -1
Query: 674 PXGGGKXXPPPXXXGXGX--FXGGKGXGXXKKXPXXXGGGG 558
P GGG PP G G G G G + P GGGG
Sbjct: 100 PLGGGGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGG 140
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = -1
Query: 668 GGGKXXPPPXXXGXGXFXGGKGXGXXKKXPXXXGGGG 558
GGG P G G GG G G + GGGG
Sbjct: 192 GGGPGRAPGGGGGGGGLGGGGGEGGAPERVIGGGGGG 228
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = -1
Query: 689 KXXXXPXGGGKXXPPPXXXGXGXFXGGKGXGXXKKXPXXXGGGG 558
K P GGG P G GG G G P GGGG
Sbjct: 86 KLLGLPPGGGGAPGPLGGGGARPPGGGGGGGPPSLPPGAGGGGG 129
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -1
Query: 674 PXGGGKXXPPPXXXGXGXFXGGKGXG 597
P GGG PPP G G GG G G
Sbjct: 388 PGGGGPGAPPPYHGGGGGGGGGGGGG 413
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 30.3 bits (65), Expect = 2.2
Identities = 18/51 (35%), Positives = 19/51 (37%)
Frame = +2
Query: 560 PPPPGXXXFFXGXXXPXPPKXPXXPGXGGGGXXFPPPXGXXXFSPKXGGNP 712
PPPPG G P P P PG +P P G P GG P
Sbjct: 41 PPPPGAYPPPPGAYPPPPGAYPPPPGAYPPQHGYPQPGGY----PPPGGYP 87
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 30.3 bits (65), Expect = 2.2
Identities = 17/50 (34%), Positives = 19/50 (38%)
Frame = +2
Query: 563 PPPGXXXFFXGXXXPXPPKXPXXPGXGGGGXXFPPPXGXXXFSPKXGGNP 712
P P G P PP P P G G PPP G + + GG P
Sbjct: 338 PSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGA---AGRGGGGP 384
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/54 (31%), Positives = 18/54 (33%)
Frame = +1
Query: 559 PPPPXXXGXFFXXPXPXPPXKXPXPXXWGGGXXFPPPXGXXXXFPKXWGKPXXK 720
PPPP P P P P G G PPP P+ G P K
Sbjct: 350 PPPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPPPALPGG-PRARGPPPFK 402
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = -3
Query: 711 GFPPXFGEXXXXPXGGGKXXPPPPXPG 631
G PP + P G PPPP PG
Sbjct: 437 GQPPPYASYPPPPPGSSMYNPPPPAPG 463
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 29.9 bits (64), Expect = 2.9
Identities = 19/54 (35%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Frame = -3
Query: 705 PPXFGEXXXXPXGGGKXX---PPPPXPGXXG--FXGGXGXXXPKKXXXXPGGGG 559
PP + GGG PPPP G G GG G P GGGG
Sbjct: 72 PPSYPSGGGGGGGGGTVMYTSPPPPYSGGGGGSSTGGGGIYYPPPTGGGGGGGG 125
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/53 (32%), Positives = 17/53 (32%), Gaps = 5/53 (9%)
Frame = +2
Query: 563 PPPGXXXFFXGXXXPXPPKXPXXPGXGGGGXXF-----PPPXGXXXFSPKXGG 706
PPP P PP P G GGGG PPP GG
Sbjct: 56 PPPPPPVVTPTPQCPPPPSYPSGGGGGGGGGTVMYTSPPPPYSGGGGGSSTGG 108
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.5 bits (63), Expect = 3.8
Identities = 24/86 (27%), Positives = 27/86 (31%), Gaps = 6/86 (6%)
Frame = +1
Query: 559 PPPPXXXGXFFXXPXPXPPXKXPXPXXWGGGXXFPPPXGXXXXF------PKXWGKPXXK 720
P PP G F P P P P P G PPP G F P P +
Sbjct: 9 PHPPPPQGGFPPQPPPMNPYGPPPPQQPAYG-HMPPPQGAPPPFLAPPPPPPPGPPPPHQ 67
Query: 721 XFXXXAPKGPKTQKXPXLGGFXXXPP 798
P P+ Q+ P PP
Sbjct: 68 PQFNFGPGPPQQQQPPPPPQMYYQPP 93
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/47 (36%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Frame = +1
Query: 559 PPPPXXXGXFFXXPXPXPPXKXPXPXXWGGGXXFP-PPXGXXXXFPK 696
PPPP P P PP P P G P PP FPK
Sbjct: 353 PPPPPPPPPPPPPPPPPPPRPPPPPPPIKKGAPPPAPPKATMARFPK 399
>08_02_0186 + 13965960-13966424
Length = 154
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +2
Query: 560 PPPPGXXXFFXGXXXPXPPKXPXXPGXGGGGXXFPP 667
PPPP P PP G GGGG + P
Sbjct: 70 PPPPSQPAGPSSHTPPCPPAAVVCCGGGGGGGQYTP 105
>01_01_0892 +
7037384-7037795,7038447-7038962,7039507-7039593,
7039698-7039768,7040148-7040224,7040380-7040527,
7040973-7041134,7041374-7041694
Length = 597
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +2
Query: 560 PPPPGXXXFFXGXXXPXPPKXPXXPGXGGGG 652
PPPP + G P PP P G GG
Sbjct: 113 PPPPPHLLHYYGHPPPPPPPPPPFKGDHYGG 143
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +2
Query: 560 PPPPGXXXFFXGXXXPXPPKXPXXPGXGGGGXXFPPP 670
PPP G F P PP P P PPP
Sbjct: 552 PPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPP 588
>07_01_0974 + 8211602-8212051
Length = 149
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = +2
Query: 563 PPPGXXXFFXGXXXPXPPKXPXXPGXGGGGXXFPP 667
PPP F+ P PP P G GGG PP
Sbjct: 37 PPPLVQQFYY--YSPPPPSSPVGGGGTGGGGPSPP 69
>03_02_0178 + 6195402-6199158,6199438-6200003
Length = 1440
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/50 (32%), Positives = 17/50 (34%)
Frame = -3
Query: 663 GKXXPPPPXPGXXGFXGGXGXXXPKKXXXXPGGGGXFXXXKNXPXPPRXG 514
G PPPP G G G K GGGG F + P G
Sbjct: 22 GPPPPPPPPRRRPGDYDGDGFDRRKGFGGGGGGGGGFYDHRYRESPSPRG 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,714,306
Number of Sequences: 37544
Number of extensions: 335729
Number of successful extensions: 1542
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1272
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -