Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_L23
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    28   2.1  
SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase family...    27   2.8  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    27   2.8  
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    27   3.7  
SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   8.5  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    26   8.5  

>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 18/70 (25%), Positives = 33/70 (47%)
 Frame = +3

Query: 363  ESKINSNTATTILKSVDKDLLAGRKKGSIKEYFSPRNIVTKKKNSSKSIQVNLDKWISEN 542
            E+  + NTA+  + S+D  ++       I +YFSP   +T  K S   + V L+++  E 
Sbjct: 940  ENTSSPNTASNPVWSIDNSVITELLPKQIWDYFSPNFYLTFWKLSLYDVFVPLERYEFER 999

Query: 543  DLCLEVPSET 572
                +   +T
Sbjct: 1000 SRAFDQIRQT 1009


>SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
 Frame = +3

Query: 438 KGSIKEYFSPRNIVTKKKNSSKSIQV--NLDKWISENDLCLEVPSETYWKVVAEKRRKAL 611
           KG +  YF   ++ T+K  + K+++     D  +    +C ++        VA    +  
Sbjct: 132 KGPVN-YFGDGHVFTEKDWNPKTLREAEESDDELLNYTVCKKLGERAMHAFVARNTPRFQ 190

Query: 612 AEALNENEILHKSLSLLTEENLNIRNW 692
           A ALN   IL     L + +NLN   W
Sbjct: 191 AIALNPPLILGPVFHLQSVDNLNFSTW 217


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 25/105 (23%), Positives = 44/105 (41%)
 Frame = +3

Query: 345 SEHSGEESKINSNTATTILKSVDKDLLAGRKKGSIKEYFSPRNIVTKKKNSSKSIQVNLD 524
           S+HS  E   +   +   L S++K  +  R    ++     R   T   ++S S + NLD
Sbjct: 306 SKHSSIEPNTSQEDSFQELPSLNKLSIQSRAFKKMRLPKISRTTDTPPASTSNSNKKNLD 365

Query: 525 KWISENDLCLEVPSETYWKVVAEKRRKALAEALNENEILHKSLSL 659
           K      LC             +++RK   ++L +++ L K  SL
Sbjct: 366 KLKKMRKLCSRSLEPYELDSNTQRKRKRYEDSLKKSKTLDKVDSL 410


>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 510 QVNLDKWISENDLC-LEVPSETYWKVVAEK 596
           ++N D W  ENDL   ++P E Y K+ + +
Sbjct: 76  KINFDAWSFENDLSDNDMPKENYLKIFSNQ 105


>SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 256

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +3

Query: 477 VTKKKNSSKSIQVNLDKWISENDLCLEVPSETYWKVVAEKRRKALAEALNENEILHKSLS 656
           +TK KN         D+ I   DL   +PS+   K+  E++  AL +  + + I H S S
Sbjct: 153 MTKMKNEKVLEYPYKDRNIMLGDLASRIPSKDSEKLDEERQPIALEKTKSLDSISHSSSS 212


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +3

Query: 519  LDKWISENDLCLEVPSETYWKVVAEKRRKALAEALNENEILHKSLSLLTEENLNIR 686
            L KW +   L    PS+  ++    K  +A+  +  E EIL K  +L+ E+NL  R
Sbjct: 2140 LSKWSTPTKLV--EPSQ--FRASPRKVDQAVVLSSEEKEILQKKYALIAEDNLIAR 2191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,911,946
Number of Sequences: 5004
Number of extensions: 33007
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)