Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_L23
         (905 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81589-1|CAB04717.1|  272|Caenorhabditis elegans Hypothetical pr...    32   0.65 
U39997-9|AAA81101.2|  468|Caenorhabditis elegans Hypothetical pr...    32   0.65 
Z79695-4|CAB01969.3|  374|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>Z81589-1|CAB04717.1|  272|Caenorhabditis elegans Hypothetical
           protein T08G5.1 protein.
          Length = 272

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +3

Query: 381 NTATTILKSVDKDLLAGRKKGSIKEYFSPRNIVTKKKNSSKSIQVNLD 524
           NT+T+     ++D+   R   SIK +  PRNI  + ++ S+ I+V+ D
Sbjct: 136 NTSTSRNTQNNEDVTVLRNFNSIKHHQKPRNIAYRPRHHSRKIRVHQD 183


>U39997-9|AAA81101.2|  468|Caenorhabditis elegans Hypothetical
           protein F56D1.1 protein.
          Length = 468

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
 Frame = +3

Query: 348 EHSGEESKINSNTATTILKSVDKDLLAGRKK--GSIKEYFSPRNIVTKKKNSSKSIQVNL 521
           E  G   + NS      ++ V+K+ +A RK+  G  K+ F P     KK      ++ ++
Sbjct: 39  EEDGNSERSNSKVCIEEVEEVEKEEIASRKRKRGKTKDEFHPCPFCEKKFRYPNKLREHI 98

Query: 522 DKWISENDLCLEVPSETYWKVVAEKR 599
               S    CLE  + T +    E R
Sbjct: 99  KIHDSNRYQCLECSTITKFGTYGELR 124


>Z79695-4|CAB01969.3|  374|Caenorhabditis elegans Hypothetical
           protein F27D4.4a protein.
          Length = 374

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +2

Query: 392 NYTKISRQRFIGWSKERQHQGILQSKEYCD*EEKFI*IYSSKFR*MDLRE 541
           N TK++ Q FI W K++  +   + KE  D +EK   I S K   M  R+
Sbjct: 236 NLTKLTLQTFIAWKKKKLRE--RKEKEEADLKEKKEKIKSGKHNGMSGRD 283


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,313,847
Number of Sequences: 27780
Number of extensions: 172621
Number of successful extensions: 520
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)