Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_L21
         (894 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC011707-1|AAH11707.1|  287|Homo sapiens nuclear receptor bindin...    68   5e-11
AY267840-1|AAP03082.1|  287|Homo sapiens comodulator of PPAR and...    68   5e-11
AY267839-1|AAP03081.1|  237|Homo sapiens comodulator of PPAR and...    68   5e-11
AL590502-2|CAO03491.1|  287|Homo sapiens nuclear receptor bindin...    68   5e-11
AL136656-1|CAB66591.1|  287|Homo sapiens hypothetical protein pr...    68   5e-11
AK054957-1|BAB70833.1|  287|Homo sapiens protein ( Homo sapiens ...    68   5e-11
AF267866-1|AAG44735.1|  277|Homo sapiens hNRBF-2 protein.              68   5e-11
AL512622-7|CAI12189.2|  844|Homo sapiens chromosome 10 open read...    31   5.6  
AL162274-2|CAH74003.2|  844|Homo sapiens chromosome 10 open read...    31   5.6  

>BC011707-1|AAH11707.1|  287|Homo sapiens nuclear receptor binding
           factor 2 protein.
          Length = 287

 Score = 67.7 bits (158), Expect = 5e-11
 Identities = 40/86 (46%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
 Frame = +2

Query: 206 PLNLAHQQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLALEAITLQHSYHLK 385
           PLNLAHQQ RRA+  L   +Y+EA+ CH+ AA  L +AMKLT S  A  ++ LQ   H+K
Sbjct: 7   PLNLAHQQSRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQAHLSLELQRDSHMK 66

Query: 386 QKDLI--KYKKEQ-YVRVKKAMDTIK 454
           Q  LI  ++K+ Q   R+K   +T K
Sbjct: 67  QLLLIQERWKRAQREERLKAQQNTDK 92


>AY267840-1|AAP03082.1|  287|Homo sapiens comodulator of PPAR and
           RXR 2 protein.
          Length = 287

 Score = 67.7 bits (158), Expect = 5e-11
 Identities = 40/86 (46%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
 Frame = +2

Query: 206 PLNLAHQQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLALEAITLQHSYHLK 385
           PLNLAHQQ RRA+  L   +Y+EA+ CH+ AA  L +AMKLT S  A  ++ LQ   H+K
Sbjct: 7   PLNLAHQQSRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQAHLSLELQRDSHMK 66

Query: 386 QKDLI--KYKKEQ-YVRVKKAMDTIK 454
           Q  LI  ++K+ Q   R+K   +T K
Sbjct: 67  QLLLIQERWKRAQREERLKAQQNTDK 92


>AY267839-1|AAP03081.1|  237|Homo sapiens comodulator of PPAR and
           RXR 1 protein.
          Length = 237

 Score = 67.7 bits (158), Expect = 5e-11
 Identities = 39/85 (45%), Positives = 54/85 (63%), Gaps = 3/85 (3%)
 Frame = +2

Query: 206 PLNLAHQQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLALEAITLQHSYHLK 385
           PLNLAHQQ RRA+  L   +Y+EA+ CH+ AA  L +AMKLT S  A  ++ LQ   H+K
Sbjct: 7   PLNLAHQQSRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQAHLSLELQRDSHMK 66

Query: 386 QKDLI--KYKKEQ-YVRVKKAMDTI 451
           Q  LI  ++K+ Q   R+K   +T+
Sbjct: 67  QLLLIQERWKRAQREERLKAQQNTL 91


>AL590502-2|CAO03491.1|  287|Homo sapiens nuclear receptor binding
           factor-2 protein.
          Length = 287

 Score = 67.7 bits (158), Expect = 5e-11
 Identities = 40/86 (46%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
 Frame = +2

Query: 206 PLNLAHQQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLALEAITLQHSYHLK 385
           PLNLAHQQ RRA+  L   +Y+EA+ CH+ AA  L +AMKLT S  A  ++ LQ   H+K
Sbjct: 7   PLNLAHQQSRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQAHLSLELQRDSHMK 66

Query: 386 QKDLI--KYKKEQ-YVRVKKAMDTIK 454
           Q  LI  ++K+ Q   R+K   +T K
Sbjct: 67  QLLLIQERWKRAQREERLKAQQNTDK 92


>AL136656-1|CAB66591.1|  287|Homo sapiens hypothetical protein
           protein.
          Length = 287

 Score = 67.7 bits (158), Expect = 5e-11
 Identities = 40/86 (46%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
 Frame = +2

Query: 206 PLNLAHQQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLALEAITLQHSYHLK 385
           PLNLAHQQ RRA+  L   +Y+EA+ CH+ AA  L +AMKLT S  A  ++ LQ   H+K
Sbjct: 7   PLNLAHQQSRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQAHLSLELQRDSHMK 66

Query: 386 QKDLI--KYKKEQ-YVRVKKAMDTIK 454
           Q  LI  ++K+ Q   R+K   +T K
Sbjct: 67  QLLLIQERWKRAQREERLKAQQNTDK 92


>AK054957-1|BAB70833.1|  287|Homo sapiens protein ( Homo sapiens
           cDNA FLJ30395 fis, clone BRACE2008385, highly similar to
           Rattus norvegicus NRBF-2 mRNA for nuclear receptor
           binding ).
          Length = 287

 Score = 67.7 bits (158), Expect = 5e-11
 Identities = 40/86 (46%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
 Frame = +2

Query: 206 PLNLAHQQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLALEAITLQHSYHLK 385
           PLNLAHQQ RRA+  L   +Y+EA+ CH+ AA  L +AMKLT S  A  ++ LQ   H+K
Sbjct: 7   PLNLAHQQSRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQAHLSLELQRDSHMK 66

Query: 386 QKDLI--KYKKEQ-YVRVKKAMDTIK 454
           Q  LI  ++K+ Q   R+K   +T K
Sbjct: 67  QLLLIQERWKRAQREERLKAQQNTDK 92


>AF267866-1|AAG44735.1|  277|Homo sapiens hNRBF-2 protein.
          Length = 277

 Score = 67.7 bits (158), Expect = 5e-11
 Identities = 40/86 (46%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
 Frame = +2

Query: 206 PLNLAHQQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLALEAITLQHSYHLK 385
           PLNLAHQQ RRA+  L   +Y+EA+ CH+ AA  L +AMKLT S  A  ++ LQ   H+K
Sbjct: 7   PLNLAHQQSRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQAHLSLELQRDSHMK 66

Query: 386 QKDLI--KYKKEQ-YVRVKKAMDTIK 454
           Q  LI  ++K+ Q   R+K   +T K
Sbjct: 67  QLLLIQERWKRAQREERLKAQQNTDK 92


>AL512622-7|CAI12189.2|  844|Homo sapiens chromosome 10 open reading
           frame 39 protein.
          Length = 844

 Score = 31.1 bits (67), Expect = 5.6
 Identities = 14/55 (25%), Positives = 30/55 (54%)
 Frame = +2

Query: 290 QSAAELLVDAMKLTTSTLALEAITLQHSYHLKQKDLIKYKKEQYVRVKKAMDTIK 454
           + A   + +A+ L      ++A  ++  YHL Q+++ + KKE    +++ M+ IK
Sbjct: 162 KGAKRQVEEALTLVIQADKIKAAEIRSVYHLHQEEITRIKKECEREIRRLMEEIK 216


>AL162274-2|CAH74003.2|  844|Homo sapiens chromosome 10 open reading
           frame 39 protein.
          Length = 844

 Score = 31.1 bits (67), Expect = 5.6
 Identities = 14/55 (25%), Positives = 30/55 (54%)
 Frame = +2

Query: 290 QSAAELLVDAMKLTTSTLALEAITLQHSYHLKQKDLIKYKKEQYVRVKKAMDTIK 454
           + A   + +A+ L      ++A  ++  YHL Q+++ + KKE    +++ M+ IK
Sbjct: 162 KGAKRQVEEALTLVIQADKIKAAEIRSVYHLHQEEITRIKKECEREIRRLMEEIK 216


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,628,682
Number of Sequences: 237096
Number of extensions: 1396532
Number of successful extensions: 7723
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7715
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11492727354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)