Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_L21
         (894 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036694-3|AAB88343.3|  344|Caenorhabditis elegans Hypothetical ...    29   3.4  
AC024817-56|AAK68528.1|  166|Caenorhabditis elegans Hypothetical...    29   4.5  
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p...    28   7.8  
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p...    28   7.8  
U88181-2|AAB42303.1|  491|Caenorhabditis elegans Dnaj domain (pr...    28   7.8  
U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as...    28   7.8  
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane...    28   7.8  

>AF036694-3|AAB88343.3|  344|Caenorhabditis elegans Hypothetical
           protein CD4.5 protein.
          Length = 344

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 21/71 (29%), Positives = 30/71 (42%)
 Frame = +1

Query: 178 NGWHQNGISSTKFGTSATSSC*SSLEESQI**SNAMSSKCCRTSC*CNEVNDLYFGFRGY 357
           NG   N  SS       TS+  S LE SQ+  +    S C   +C  N+ +  +FG  G 
Sbjct: 137 NGLEDNDASSAITVQKITSTASSILESSQV--NVKELSSCSALTCTFNDGDSCFFGLSGV 194

Query: 358 YAATQLSLKTK 390
            +    SL  +
Sbjct: 195 GSTAAWSLSDR 205


>AC024817-56|AAK68528.1|  166|Caenorhabditis elegans Hypothetical
           protein Y54G2A.3 protein.
          Length = 166

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 23/78 (29%), Positives = 35/78 (44%)
 Frame = +2

Query: 224 QQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLALEAITLQHSYHLKQKDLIK 403
           QQHRR     K    DE  Q   S  +  +D  KL    L    I   + +  K   ++K
Sbjct: 11  QQHRR-----KKKPADEVTQKMPSGEKEPMDPYKL--EALKKAQIERNNEWIEKMSPIVK 63

Query: 404 YKKEQYVRVKKAMDTIKR 457
           YK ++Y+R ++A    +R
Sbjct: 64  YKIQEYIRKQRAKKMQRR 81


>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
            K08E5.3b protein.
          Length = 3183

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 453  LIVSMAFLTLTYCSFLYF-IKSFCFK 379
            +++++ FL LT C  LYF  K  CFK
Sbjct: 2837 ILLALLFLLLTLCCLLYFCTKCHCFK 2862


>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
            K08E5.3a protein.
          Length = 3767

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 453  LIVSMAFLTLTYCSFLYF-IKSFCFK 379
            +++++ FL LT C  LYF  K  CFK
Sbjct: 3421 ILLALLFLLLTLCCLLYFCTKCHCFK 3446


>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
            protein K08E5.3b protein.
          Length = 3183

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 453  LIVSMAFLTLTYCSFLYF-IKSFCFK 379
            +++++ FL LT C  LYF  K  CFK
Sbjct: 2837 ILLALLFLLLTLCCLLYFCTKCHCFK 2862


>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
            protein K08E5.3a protein.
          Length = 3767

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 453  LIVSMAFLTLTYCSFLYF-IKSFCFK 379
            +++++ FL LT C  LYF  K  CFK
Sbjct: 3421 ILLALLFLLLTLCCLLYFCTKCHCFK 3446


>U88181-2|AAB42303.1|  491|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 7 protein.
          Length = 491

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 236 RAEAHLKNHRYDEAMQCHQSAAELLVD 316
           RAEAH+ +  YD A++ +Q A E+  D
Sbjct: 331 RAEAHILDEDYDSAIEDYQKATEVNPD 357


>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 77 protein.
          Length = 1004

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +2

Query: 386 QKDLIKYKKEQYVRVKKAMDTI-KRLGKEPISNLQGHDYAQLQI 514
           Q + ++Y KE  V   + M+   KR+G++ +++  GH+   LQI
Sbjct: 364 QNNYVQYLKEMAVLYPEYMERFGKRVGRDLLASHNGHENVVLQI 407


>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
            adhesion receptorMUA-3 precursor protein.
          Length = 3767

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 453  LIVSMAFLTLTYCSFLYF-IKSFCFK 379
            +++++ FL LT C  LYF  K  CFK
Sbjct: 3421 ILLALLFLLLTLCCLLYFCTKCHCFK 3446


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,612,221
Number of Sequences: 27780
Number of extensions: 248217
Number of successful extensions: 736
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)