Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_L20
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    33   0.072
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    27   3.6  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    27   3.6  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    27   4.7  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 32.7 bits (71), Expect = 0.072
 Identities = 22/73 (30%), Positives = 34/73 (46%)
 Frame = +2

Query: 554 SWILTVPSLKTSASRVVKSYLSTISTRTCTLKTFTLSDSLYVKFSTLST*WVKYSSWTSF 733
           SW  T P   TS S+V  S    +++   T  TFT S S+    S+ +T    ++S +S 
Sbjct: 618 SWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSSSSTATSSTSFASESSS 677

Query: 734 WTENFQLMAVTWS 772
           +  N    + T S
Sbjct: 678 FYSNVTTSSSTVS 690



 Score = 26.2 bits (55), Expect = 6.2
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
 Frame = +2

Query: 23  TTRAFLXTFASIPHPXXGPSR-TSVLTPASRRAARPPCLXFSAP*RGFSSSXLCASTTMC 199
           TT     T  SIP      +  T  + P S  +   P    S    G SSS L +++T C
Sbjct: 280 TTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSC 339

Query: 200 SAYITKPP 223
           +   + PP
Sbjct: 340 TTSTSIPP 347


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = -2

Query: 353 VKVEYIQQYVSITASGIXSTMQSIGSPMYXRDVTRSENAXKIXTVAL*CKRNTLLSMHTE 174
           V  EYI++ ++   S    T+  I + +Y   +   E   +    ++ C RNTLLS+H  
Sbjct: 145 VGAEYIKKVIARLQSYDRRTLDQIAAKLYFYYILFFEKCNR----SVEC-RNTLLSVHRT 199

Query: 173 XSLR 162
            SLR
Sbjct: 200 ASLR 203


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +1

Query: 559  DLNCPIVEDECKSGRKKLLVDYFHTNLHTQNFYAFRFF 672
            D     V +E KS  K LL    +T LH   +Y F FF
Sbjct: 1277 DFGTKCVIEEVKSSHKTLL----NTELHLTKYYGFSFF 1310


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/27 (40%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
 Frame = -1

Query: 360 RDGESRVYPAVR-VHNGERDXINDAVN 283
           ++G+  ++P+V+ +H GER+ IND V+
Sbjct: 20  KNGQILLHPSVQPLHPGERELINDIVS 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,232,185
Number of Sequences: 5004
Number of extensions: 65933
Number of successful extensions: 211
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)