Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_L19
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom...    87   2e-18
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    29   1.2  
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    28   1.5  
SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   4.7  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    26   6.2  
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   8.2  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    26   8.2  

>SPBC29A3.16 |||ribosome biogenesis protein Rrs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 87.4 bits (207), Expect = 2e-18
 Identities = 43/117 (36%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
 Frame = +2

Query: 404 NNAQLLLNKVWELPTERIEEAIVVRLPQPTTILPRAKPVPVPKPLTKWQEFA-XXXXXXX 580
           +N Q L+NK+  LP ER  + ++++LP+  T LPRAKP+P PKP TKWQ FA        
Sbjct: 46  DNVQQLVNKMISLPKERTSDGVLLQLPETVTPLPRAKPLPKPKPETKWQRFARIKGIAPK 105

Query: 581 XXXXXLQWDEQLQKWVPLYGFKKTAAEKEKNWLIEVPQNLDPMTDMYEKKAGEKSEK 751
                L +DE   +WVP +G+K    E E  WL+E  +    +T    +   +K ++
Sbjct: 106 KREGRLVFDEASGEWVPKWGYKGKNKELETQWLVEEGEKEKKLTSKQVRNTSKKIKR 162


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 744  DFSPAFFSYISVIGSKFCGTSISQFFSFSAAVFLKPYKGT 625
            +F+PA+F YIS +      T++++ F F       P  GT
Sbjct: 1725 NFAPAYFDYISKVFFHELPTALTKIFGFYRVDIRNPTTGT 1764


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -1

Query: 732 AFFSYISVIGSK--FCGTSISQFFSFSAAVFL 643
           A+FSY  V+ S   FCG ++  ++ F   +FL
Sbjct: 74  AYFSYFRVLFSSPSFCGNTLYTYYGFDNPIFL 105


>SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 449 ERIEEAIVVRLPQPTTILPRAKPVPVPK 532
           ER++E IV+   +P   LP A P+P+ K
Sbjct: 72  ERLKEWIVLAKVRPEIPLPPAAPIPMKK 99


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 21/65 (32%), Positives = 30/65 (46%)
 Frame = +2

Query: 614 LQKWVPLYGFKKTAAEKEKNWLIEVPQNLDPMTDMYEKKAGEKSEKVAKNELQRLXNLAR 793
           L KW P    K+T   K     +E+   L P T+  +  AG+K    AKN  Q+  +  +
Sbjct: 162 LLKWAPQLEVKQTLDRK----FLEL---LGPKTEQ-DAAAGKKKGAKAKNSKQKTVDSGK 213

Query: 794 AKXXK 808
           AK  K
Sbjct: 214 AKEQK 218


>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 701 DPMTDMYEKKAGEKSEKVAKNELQRLXNLAR 793
           DP  D Y ++A EK+E++A NE Q++  + +
Sbjct: 171 DPFFDSYLEQAFEKAERLA-NEQQKISKVEK 200


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 373 CLSSAFLCPNRLCQRPIVNLGRMLIPNVFRPLL 275
           CLS+ +LC   LCQ+      R L P +   LL
Sbjct: 469 CLSAFYLCMPSLCQKSYGTERRYLCPPIVLYLL 501


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,016,695
Number of Sequences: 5004
Number of extensions: 57521
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)