Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_L19
         (882 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1646 - 35027475-35027600,35027713-35027826,35027920-350281...    87   1e-17
03_05_0013 - 19718178-19718930,19718997-19719205,19719245-197193...    29   4.9  
06_01_1138 - 9429447-9433868                                           28   8.6  

>04_04_1646 -
           35027475-35027600,35027713-35027826,35027920-35028106,
           35028262-35028379,35028699-35028827,35028947-35028998,
           35029525-35029869
          Length = 356

 Score = 87.4 bits (207), Expect = 1e-17
 Identities = 45/129 (34%), Positives = 67/129 (51%)
 Frame = +2

Query: 410 AQLLLNKVWELPTERIEEAIVVRLPQPTTILPRAKPVPVPKPLTKWQEFAXXXXXXXXXX 589
           AQ + + ++ LP     +  +VRLP PTT  PR K +P PKP TKW++FA          
Sbjct: 80  AQAVADALFALPATEDRDGPMVRLPPPTTRFPREKHLPRPKPPTKWEQFAKMKGITKHKK 139

Query: 590 XXLQWDEQLQKWVPLYGFKKTAAEKEKNWLIEVPQNLDPMTDMYEKKAGEKSEKVAKNEL 769
              +WDEQ Q W   YG+ +   +K+   +IE     +P  D + ++  +K + V K E 
Sbjct: 140 NKREWDEQTQTWKRTYGYDRVNDDKDIP-IIEAKATDEPGVDPFAQRREDKKKHVEKQEK 198

Query: 770 QRLXNLARA 796
            RL NL +A
Sbjct: 199 NRLENLKKA 207


>03_05_0013 -
           19718178-19718930,19718997-19719205,19719245-19719325,
           19719581-19720613
          Length = 691

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 413 QLLLNKVWELPTERIEEAIVVRLPQPTTILPRAKPVPVPKPLTKWQE 553
           Q  L K   +PT R  + I+V+L      L ++KP   PKP   W+E
Sbjct: 628 QNFLEKETTMPTNRYWK-ILVKLSTLAKKLEQSKPSSTPKPKKVWKE 673


>06_01_1138 - 9429447-9433868
          Length = 1473

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
 Frame = +2

Query: 632  LYGFKKTAAEKEKNWLIEVPQNLDPMTD-MYEKKAGEKSEKVA-----KNELQRLXNLAR 793
            L  FKK   E+ KN+++E P     MTD ++EK+A  K +K+       N L  +  L +
Sbjct: 1238 LLTFKKGEFEQLKNFVVEGPN----MTDIIFEKEAAPKLQKIVLSLTNVNSLSGVEGLPK 1293

Query: 794  AKXXKYQG 817
             K  + +G
Sbjct: 1294 LKEIELKG 1301


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,101,862
Number of Sequences: 37544
Number of extensions: 355859
Number of successful extensions: 947
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)