Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_L17
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    30   0.50 
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po...    29   1.2  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    29   1.2  
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     27   4.7  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   6.2  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    26   8.2  

>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 762 PSWAVCTNPPFSPTAAPYPVTIVLSXPGKHDLSPWQQP 875
           P WA  +    S T++P P     S     + +PWQQP
Sbjct: 407 PPWAAASTSVSSSTSSPAPWAKPASSAAPSNPAPWQQP 444


>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 361

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +1

Query: 847 NTTYRPGSSHW 879
           NTTYRPG+ HW
Sbjct: 99  NTTYRPGTQHW 109


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +1

Query: 454 ERTCEQKASKRPGTVKRPRCWRFSIGSAPLNEHHKNRRSSQRWRNPT-GL*RYQAFPPGS 630
           E T  +  S   G+   PR  RF++G+   + +  N   +Q + N T    R    P G 
Sbjct: 518 EHTGNRVVSFPRGSAFNPRVTRFNVGNEQFSNNIDNNNYNQPYANATMNNSRRLRTPSGE 577

Query: 631 SLVRSPVS-DPAAY 669
             +R+ +S  PA+Y
Sbjct: 578 RSMRADLSQSPASY 591


>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +3

Query: 678 CPPFSLREAWRFLIAHAVCISVRCRSFAPSWAVCTNPPFSPTAAPYPVTIV 830
           C  F +R    +++  A  +     + + +W VCT+   + T   YP  IV
Sbjct: 138 CFDFRVRHPHNYMVKFAKSLKFSSSTASIAWNVCTDAYKTYTMLKYPAHIV 188


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = +1

Query: 541 LNEHHKNRRSSQRWRNPTGL*RYQAF----PPG 627
           L ++HKNR+S+     P GL  Y+A     PPG
Sbjct: 387 LQDYHKNRKSNFNKPGPDGLGLYKAVLLSGPPG 419


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +3

Query: 654 RPCRLPDTCPPFSLREAWRFLIAHAVCISVRCRSFAPSWAVCTNPPFSPTAAPYPV 821
           R   L +T  PFS++   RF I HA   +VR    A  W +  +  F    +P+ +
Sbjct: 434 RSILLVNTNEPFSMKT--RFKIQHATEWNVRVVGVAWLWNIIQSGKFIDQVSPWAI 487


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,304,878
Number of Sequences: 5004
Number of extensions: 67683
Number of successful extensions: 204
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)