Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_L13
         (894 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0179 - 23342764-23342973,23343185-23343340,23343535-233435...    32   0.54 
09_02_0135 - 4721645-4722277,4722952-4723014,4723361-4724287           30   2.2  
04_04_0456 - 25355409-25355751,25356047-25356205,25356317-253565...    30   2.9  
06_02_0217 + 13170731-13170826,13170886-13171203                       28   8.7  
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390...    28   8.7  

>04_04_0179 -
           23342764-23342973,23343185-23343340,23343535-23343593,
           23344150-23344226,23344309-23344587,23344800-23344885,
           23344960-23345027,23345721-23345904,23346071-23346204,
           23346776-23347039,23347613-23347677,23347833-23348407,
           23348501-23348680,23348765-23348928,23349008-23349261,
           23349405-23349562,23349808-23349948,23350176-23350282,
           23350651-23350737,23350812-23350901,23350974-23351055,
           23351370-23351561,23351748-23351816,23351959-23352294,
           23352694-23352837,23352963-23353126,23353817-23353883
          Length = 1463

 Score = 32.3 bits (70), Expect = 0.54
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = +1

Query: 739 RLGGMFQICTKEKLLPSHSTEYAPGGSADLAEMPVYHISLLTGXS 873
           R GG+ +I +  K LPS+S+    GGSADL +  +  + LL+  S
Sbjct: 155 RYGGIVKIASSSKRLPSYSSR--GGGSADLNQQMLEFVHLLSEVS 197


>09_02_0135 - 4721645-4722277,4722952-4723014,4723361-4724287
          Length = 540

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +3

Query: 333 PXXWRGLASLVGISSQEAGSIHQCSNKXDKVLEIWQRNGSPTVGQLLEISAAFGQ 497
           P  W  + +L  ISS    SIH+ S +   ++++W  +    VG  +E++  F Q
Sbjct: 39  PKPWPIIGNLNLISSLPHRSIHEISKRHGPIVQLWFGSCPVVVGSSVEMAKLFLQ 93


>04_04_0456 -
           25355409-25355751,25356047-25356205,25356317-25356513,
           25356602-25356794,25357044-25358287
          Length = 711

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 22/67 (32%), Positives = 28/67 (41%)
 Frame = -3

Query: 469 SWPTVGDPFLCHIXXXXXXXXLHWWMEPASCDEIPTSDAKPRQXLGSLSGPXXGIIFLXX 290
           S P + D F CH         L W  +P  CD IP     P   L  L G    IIF+  
Sbjct: 381 SCPHIDDDFNCHKNGRADTGFLRWRWQPHGCD-IPR--LNPIDFLERLRGQR--IIFVGD 435

Query: 289 NRHXNIW 269
           + + N+W
Sbjct: 436 SLNRNMW 442


>06_02_0217 + 13170731-13170826,13170886-13171203
          Length = 137

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +1

Query: 535 KHISRGELTVNQPAFEGGQVAIKHNDIISNE--DVYVPITIDDDEGYEQHYDAF 690
           K I + ++   Q   E  +  ++ N II +E  D+ + +  DD+E   + Y+A+
Sbjct: 63  KRIKKRKIETRQIVVEETRNELRINKIIKSEESDIEIEVNTDDEENKAEEYEAW 116


>03_01_0520 -
           3900387-3900613,3900812-3900853,3902092-3902210,
           3903633-3903712,3903829-3903856,3904151-3904272,
           3904714-3904857,3904897-3906327
          Length = 730

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +1

Query: 550 GELTVNQPAFEGGQVAIKH-NDI--ISNEDVYVPITIDDDEGYEQHY 681
           G L      + GGQVA+ H N +  +  ED + P+  +  + Y+QH+
Sbjct: 113 GHLLSTNQTYHGGQVALSHPNSVMPVPGEDSF-PLQQNHHQQYQQHH 158


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,833,613
Number of Sequences: 37544
Number of extensions: 317608
Number of successful extensions: 672
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)