Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_L13
         (894 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91803-1|CAA62913.1|  880|Caenorhabditis elegans sodium-calcium ...    30   2.6  
AL132858-14|CAJ90511.1|  873|Caenorhabditis elegans Hypothetical...    30   2.6  
AL132858-13|CAB60477.1|  880|Caenorhabditis elegans Hypothetical...    30   2.6  

>X91803-1|CAA62913.1|  880|Caenorhabditis elegans sodium-calcium
           exchanger protein.
          Length = 880

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +1

Query: 577 FEGGQVAIKHNDIISNEDVYVPITIDDDEGYEQHYDAFV 693
           +E  +  +K  D  S  ++Y+PI ++DDE YE+H D ++
Sbjct: 561 YEHQEGVLKFADEQSKAEIYIPI-VNDDE-YEKHEDFYI 597


>AL132858-14|CAJ90511.1|  873|Caenorhabditis elegans Hypothetical
           protein Y113G7A.4b protein.
          Length = 873

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +1

Query: 577 FEGGQVAIKHNDIISNEDVYVPITIDDDEGYEQHYDAFV 693
           +E  +  +K  D  S  ++Y+PI ++DDE YE+H D ++
Sbjct: 561 YEHQEGVLKFADEQSKAEIYIPI-VNDDE-YEKHEDFYI 597


>AL132858-13|CAB60477.1|  880|Caenorhabditis elegans Hypothetical
           protein Y113G7A.4a protein.
          Length = 880

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +1

Query: 577 FEGGQVAIKHNDIISNEDVYVPITIDDDEGYEQHYDAFV 693
           +E  +  +K  D  S  ++Y+PI ++DDE YE+H D ++
Sbjct: 561 YEHQEGVLKFADEQSKAEIYIPI-VNDDE-YEKHEDFYI 597


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,768,900
Number of Sequences: 27780
Number of extensions: 274569
Number of successful extensions: 624
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)