Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_L11
(914 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 68 2e-12
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 52 9e-08
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 51 3e-07
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 45 1e-05
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 44 2e-05
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 37 0.005
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 29 1.2
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 27 3.7
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 27 3.7
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||... 27 4.9
SPCC584.12 |mug42||sequence orphan|Schizosaccharomyces pombe|chr... 27 4.9
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 8.6
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 68.1 bits (159), Expect = 2e-12
Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Frame = +3
Query: 549 PD-NEASICMHCKKTQFTVINRRHHCRKCGSVVCGPCSSKRYILRGQS-DKPLRVCLQCY 722
PD ++ +C+ C+ T FT NR+HHCR CG V C CSSK L ++P+RVC CY
Sbjct: 168 PDWTDSEVCLRCR-TPFTFTNRKHHCRNCGGVFCNQCSSKTLSLPHLGINQPVRVCDSCY 226
Query: 723 D-----ELSRERVRPPNQQQTSANTTPVKPI 800
+ S+ R R + TP KP+
Sbjct: 227 SLRTKPKGSKSRARNERKFHAKTRKTPSKPV 257
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 52.4 bits (120), Expect = 9e-08
Identities = 28/89 (31%), Positives = 42/89 (47%)
Frame = +3
Query: 453 KEEWMAHIEKCIEDLLRKSGKQPPSEHAAVWVPDNEASICMHCKKTQFTVINRRHHCRKC 632
+E W + ++ LL K+ + W D+ IC C + FT+ RR HCR C
Sbjct: 243 EELWTSENVSMLDALLLNKAKRL-EQSIVHWQDDSVVQICPECNNS-FTLTRRRRHCRLC 300
Query: 633 GSVVCGPCSSKRYILRGQSDKPLRVCLQC 719
G V+C C + I Q +PL +C+ C
Sbjct: 301 GRVICRFCVLE--ISLPQHPQPLLICMSC 327
Score = 30.7 bits (66), Expect = 0.30
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Frame = +3
Query: 543 WVPDNEASICMH--CKKTQFTVINRRHHCRKCGSVVCGPCSSKRYILR------GQSDKP 698
W P+ +C C K IN HCRKCG + C S + L ++
Sbjct: 131 WQPEVPDMVCHDPMCDKL-LNFINGHIHCRKCGYIFCNFHSMYQIKLSIHATYDSENGFW 189
Query: 699 LRVCLQCYD 725
RVC +CY+
Sbjct: 190 CRVCRECYE 198
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 50.8 bits (116), Expect = 3e-07
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Frame = +3
Query: 474 IEKCIEDLLRKSGKQPPSEHAA-VWVPDNEASICMHCKKTQFTVINRRHHCRKCGSVVCG 650
I K E+++ + K P S + W+ D + C C+ T+FT+ R+HHCR CG ++C
Sbjct: 33 IIKDSENVVHTTLKLPTSTLSREFWMKDERTNNCSLCE-TEFTLFRRKHHCRICGKIICK 91
Query: 651 PC--SSKRYILRGQSDKPLRVCLQC 719
C + +I R Q ++VC C
Sbjct: 92 YCLKEAPGFIFRLQGS--IKVCRPC 114
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 45.2 bits (102), Expect = 1e-05
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +3
Query: 534 AAVWVPDNEASICMHCKKTQFTVINRRHHCRKCGSVVCGPC 656
AA+W D+E++ C +C FT RRHHCR CG + C C
Sbjct: 21 AAIWQLDDESAQCNNCGGP-FTWFRRRHHCRWCGKLFCYNC 60
>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 293
Score = 44.4 bits (100), Expect = 2e-05
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 543 WVPDNEASICMHCK-KTQFTVINRRHHCRKCGSVVC 647
W PD++ S+C +F + +RRHHCR+CG + C
Sbjct: 151 WKPDSDVSVCSFPSCSVRFGLFDRRHHCRRCGDIFC 186
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 36.7 bits (81), Expect = 0.005
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +3
Query: 552 DNEASICMHCKKTQFTVINRRHHCRKCG-SVVCGPCSSKRYILRGQSDKPLRVCLQCYDE 728
DN + +C C ++F+++ R CR CG S VC C S +L+ D ++ C +CY +
Sbjct: 2550 DNTSELCSLCD-SRFSLMEWRSQCRACGNSNVCSDCVS---MLK---DTNIKTCYECYRQ 2602
Query: 729 L 731
+
Sbjct: 2603 M 2603
>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/51 (31%), Positives = 21/51 (41%)
Frame = +3
Query: 570 CMHCKKTQFTVINRRHHCRKCGSVVCGPCSSKRYILRGQSDKPLRVCLQCY 722
C CKK + R+ C KC S VC CS + ++ C CY
Sbjct: 76 CESCKKHTCAICIRQ--CHKCESNVCSMCSKQERTFESEA-----FCPSCY 119
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 384 YRNGWLIRTASKSFAVYAATATE 452
Y+NG+++ A KS Y A ATE
Sbjct: 280 YKNGFIVAGADKSIRWYRAAATE 302
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 420 SFAVYAATATEKEEWMAHIEKCIEDLLRK 506
S ++Y T +++W HIEK +D++RK
Sbjct: 780 SISLYLNTLIARDQWKQHIEK-QQDIIRK 807
>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 26.6 bits (56), Expect = 4.9
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Frame = +3
Query: 549 PDNEASICMHCKK--TQFTV-INRR---HHCRKCGSVVCGPCSSKRYILRGQSDKPLRVC 710
P N A++CM C K T T I R +HCR+C + P + I +S + + +C
Sbjct: 32 PPNAAAMCMDCIKMTTDITSGIPRESTVNHCRECERYMQPP--NNWMIAPLESRELMAIC 89
Query: 711 LQCYDELSRERVRPPNQQQTSANTTPVK 794
L+ L++ R+ N T ++ +K
Sbjct: 90 LKKLRGLNQVRLVDANFIWTEPHSRRIK 117
>SPCC584.12 |mug42||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 115
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -3
Query: 237 CKFLSRH--LHRQGPALALLEVVPSCRSSSPPLQFFLHLLH 121
C+FL H ++Q P + + + S + PL FF+ LLH
Sbjct: 52 CRFLLHHNAKNKQFPLIFVTNFITSLPNFQFPLFFFVSLLH 92
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.8 bits (54), Expect = 8.6
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = +3
Query: 444 ATEKEEWMAHIEKCIEDLLRKSGKQPPSEHAAVWVPDNEASICMHCKKTQ 593
A++ E + + + +E+LLR GK S+ + + + S+C + +Q
Sbjct: 167 ASQDEAVLLRVSRLMEELLRGPGKAVLSDDSICEIVETGLSMCCQSRLSQ 216
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,387,240
Number of Sequences: 5004
Number of extensions: 69713
Number of successful extensions: 202
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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