Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_L10
         (930 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   0.38 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.71 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   0.87 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.0  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect(2) = 0.38
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = -2

Query: 779 PPPXXGGXFXXXXPGGGGPPXXXXPPPPP 693
           PPP          P G G      PPPPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341



 Score = 23.4 bits (48), Expect(2) = 0.38
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 605 PPGGGXXXPPPPP 567
           PP G    PPPPP
Sbjct: 354 PPQGRSAPPPPPP 366


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 14/47 (29%), Positives = 14/47 (29%)
 Frame = -2

Query: 707 PPPPPXXXXXXXXXXXXXXXXXXXXXXXXGXXXPPPGGGXXXPPPPP 567
           PPPPP                            PPPG     PPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect(2) = 0.87
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 599 GGGXXXPPPPPXXXGGXG 546
           GGG   PPP P   GG G
Sbjct: 194 GGGSGGPPPGPGGFGGFG 211



 Score = 21.4 bits (43), Expect(2) = 0.87
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -2

Query: 764 GGXFXXXXPGGGGPP 720
           GG F     G GGPP
Sbjct: 187 GGGFGGFGGGSGGPP 201


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = -2

Query: 794 PXGGAPPPXXGGXFXXXXPGGGGPPXXXXPPPPP 693
           P G  PPP          P G  PP    PPPPP
Sbjct: 5   PPGNPPPPPP--------PPGFEPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,201,229
Number of Sequences: 5004
Number of extensions: 13880
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)