Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_L08
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...   111   2e-25
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...   109   6e-25

>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score =  111 bits (266), Expect = 2e-25
 Identities = 53/95 (55%), Positives = 70/95 (73%), Gaps = 3/95 (3%)
 Frame = +2

Query: 149 CTNCARCVPKXKAIKKFVXRXIVXAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSK 328
           C NC+R VPK KAIK++  R +V  AA+RD+++ASVY  + +PKLY KL YCVSCAIHS+
Sbjct: 23  CINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYSEYTIPKLYIKLQYCVSCAIHSR 82

Query: 329 VVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 424
           VVR RS++ RRIRT PP+  + RD  +  P AV +
Sbjct: 83  VVRVRSREGRRIRTPPPRVRYNRDGKKVNPTAVAK 117



 Score = 37.9 bits (84), Expect = 0.002
 Identities = 16/21 (76%), Positives = 17/21 (80%)
 Frame = +1

Query: 82  MPRKRRNGGRAKHGRGHVKAV 144
           M +KRRN GR KHGRGHVK V
Sbjct: 1   MTQKRRNNGRNKHGRGHVKFV 21


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score =  109 bits (261), Expect = 6e-25
 Identities = 51/95 (53%), Positives = 70/95 (73%), Gaps = 3/95 (3%)
 Frame = +2

Query: 149 CTNCARCVPKXKAIKKFVXRXIVXAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSK 328
           C NC+R VPK KAIK++  R +V  AA+RD+++ASVY  + +PK+Y KL YCVSCAIH++
Sbjct: 23  CINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYSEYAIPKIYVKLQYCVSCAIHAR 82

Query: 329 VVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 424
           VVR RS++ RRIRT PP+  + RD  R  P A+ +
Sbjct: 83  VVRVRSREGRRIRTPPPRVRYNRDGKRVNPAAIAK 117



 Score = 35.1 bits (77), Expect = 0.013
 Identities = 15/21 (71%), Positives = 16/21 (76%)
 Frame = +1

Query: 82  MPRKRRNGGRAKHGRGHVKAV 144
           M +KRRN GR KHGRGH K V
Sbjct: 1   MTQKRRNCGRNKHGRGHTKFV 21


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,327,175
Number of Sequences: 5004
Number of extensions: 35419
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)