Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_L08
         (854 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474...   106   2e-23
07_03_0631 + 20104332-20106802,20106904-20107030,20107352-201074...    30   2.7  
10_08_0190 + 15607241-15607409,15607932-15607990,15608883-156089...    28   8.3  

>01_06_1177 +
           35147036-35147038,35147128-35147220,35147322-35147406,
           35147588-35147760
          Length = 117

 Score =  106 bits (255), Expect = 2e-23
 Identities = 48/88 (54%), Positives = 66/88 (75%)
 Frame = +2

Query: 149 CTNCARCVPKXKAIKKFVXRXIVXAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSK 328
           C+NCA+C PK KAIK+F  R IV  AA+RD+ +A V+  + LPKLYAK+H+CVSCAIH+ 
Sbjct: 23  CSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAH 82

Query: 329 VVRNRSKKDRRIRTPPKSNFPRDMSRPQ 412
           +VR RS+++RR R PP+  F R +  P+
Sbjct: 83  IVRVRSRENRRDRRPPE-RFRRRVPDPR 109



 Score = 38.3 bits (85), Expect = 0.008
 Identities = 16/21 (76%), Positives = 17/21 (80%)
 Frame = +1

Query: 82  MPRKRRNGGRAKHGRGHVKAV 144
           M  KRRNGGR KHGRGHVK +
Sbjct: 1   MTFKRRNGGRNKHGRGHVKYI 21


>07_03_0631 + 20104332-20106802,20106904-20107030,20107352-20107479,
            20108771-20109083
          Length = 1012

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 82   MPRKRRNGGRAKHGRGH-VKAVXLHKLRAVRAKXQGYQKVRX*XHRXSGGGQRY 240
            +PR+RR+G  A+ GRG   +A+ L +    R   +G   VR    R SG  Q +
Sbjct: 956  LPRERRHGSGARRGRGRAARAIGLRRRVLTRDSGEG---VRLAASRPSGKMQNF 1006


>10_08_0190 +
           15607241-15607409,15607932-15607990,15608883-15608991,
           15609394-15609551,15609976-15610044,15610158-15610847,
           15611112-15611629,15611725-15611789,15613010-15613089,
           15613894-15613998,15614768-15614881,15615029-15615168,
           15615257-15615385,15615903-15616055,15616186-15616327
          Length = 899

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = +2

Query: 647 FVTIISCNKQVNNNNCIHFMFQVQGEVWEGFFCINESANARXXXXAYWAL 796
           F +  +C++     +C   +    G +W+  F I  ++N      A+WAL
Sbjct: 589 FYSFCTCDRDHGGFDCNDELVSPNGHIWQSVFLI--ASNGAAILPAFWAL 636


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,860,416
Number of Sequences: 37544
Number of extensions: 251272
Number of successful extensions: 511
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)