Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_L08
         (854 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical pr...   124   6e-29
Z69634-3|CAA93454.4|  553|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical
           protein F39B2.6 protein.
          Length = 117

 Score =  124 bits (300), Expect = 6e-29
 Identities = 56/76 (73%), Positives = 61/76 (80%)
 Frame = +2

Query: 149 CTNCARCVPKXKAIKKFVXRXIVXAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSK 328
           CTNC RC PK KAIKKFV R IV AAAVRDI DAS Y  + LPKLY KLHYC++CAIHSK
Sbjct: 23  CTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYTQYALPKLYHKLHYCIACAIHSK 82

Query: 329 VVRNRSKKDRRIRTPP 376
           VVRNRS++ RR R PP
Sbjct: 83  VVRNRSREARRDRNPP 98


>Z69634-3|CAA93454.4|  553|Caenorhabditis elegans Hypothetical
           protein B0001.5 protein.
          Length = 553

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +1

Query: 298 LLRVMRHPQQSCQEQIEERQKNPYSSQE*LP*GHVTSTGSAK 423
           ++ V + P +S   ++ + QKN Y+S E    GH TS+ +A+
Sbjct: 374 VINVYKEPSRSHANELYDSQKNQYTSHE----GHSTSSPTAE 411


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,267,411
Number of Sequences: 27780
Number of extensions: 214732
Number of successful extensions: 483
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)