Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_L07
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    29   0.66 
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    27   3.5  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    27   4.6  
SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr...    26   6.1  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    26   6.1  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    26   6.1  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    26   6.1  

>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -3

Query: 592 RTRSGSCGRHTTKNTANGLKRTQTPSHAIRNHVGRNAICSNIVHRM 455
           R  S  CGR   K+ A  +K  +  S+A++N +  + I  N+V  +
Sbjct: 316 RVWSAFCGRLNDKSVACRIKCIEVASNALQNSLATSEIIENVVQML 361


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 450 VXEVAKHILQYVMLVITIIVCILFV 376
           V  +++ +L Y +L I I+VCILF+
Sbjct: 539 VLGISRDLLAYAILFIHIMVCILFL 563


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 376 CRCFAIDQCLDQRAITNATSSTSIPRFYLVVSIVP 272
           C  ++    + Q  + NATS    PR   +VSIVP
Sbjct: 282 CVFYSFSSMISQAQMLNATSPLLDPRTTQIVSIVP 316


>SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 559 TKNTANGLKRTQTPSHAIRNHVGRNAI 479
           T NT N LK+  +  + +R H+ RN+I
Sbjct: 243 TDNTENNLKKKASFIYRLRKHLKRNSI 269


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -1

Query: 495  WAETLSVRTL--FIECCVXEVAKHILQYVMLVITIIVCILFVAAASP 361
            W E +S   +  F+ C +       L+Y ML I I+ CI+     +P
Sbjct: 1291 WIEGVSASLMQHFLPCILDSCFSKNLRYSMLGIEILKCIIHQGLVNP 1337


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = -3

Query: 385 FVCCRCFAIDQCLDQRAITNATSSTSIPRFYLVVSIVP 272
           F C +CF  D C D  A          P F LV S +P
Sbjct: 74  FHCTKCFDFDVCRDCYAKQAFLHPCPKPHFVLVRSSIP 111


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 23/75 (30%), Positives = 35/75 (46%)
 Frame = +2

Query: 341 LIEALVNGEAAATNKIQTIIVITSITYCSMCLATSXTQHSMNNVRTDSVSAHVVPDGVAG 520
           LIE+    EA+ +N+ ++ I   S    S  ++   + HS  +   DS S+ V   G  G
Sbjct: 490 LIESDSGIEASESNRRKSDIFSFSGRN-SFSVSRPSSSHSTLSYANDSASSAVNVAGETG 548

Query: 521 GLRPLQSVRCILRGV 565
            L PL+    I  GV
Sbjct: 549 SLPPLREQTSITSGV 563


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,655,861
Number of Sequences: 5004
Number of extensions: 47819
Number of successful extensions: 114
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)