Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_L07
         (876 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L02074-3|AAB05984.1|  200|Drosophila melanogaster protein ( Dros...    30   4.8  
L02074-2|AAB05983.1|  200|Drosophila melanogaster protein ( Dros...    30   4.8  
BT022735-1|AAY55151.1|  149|Drosophila melanogaster IP07614p pro...    30   4.8  
BT022511-1|AAY54927.1|  147|Drosophila melanogaster IP07914p pro...    30   4.8  
AE014298-1077|AAS65274.1|  135|Drosophila melanogaster CG33222-P...    30   4.8  
AE014298-1076|AAF46287.3|  135|Drosophila melanogaster CG11386-P...    30   4.8  

>L02074-3|AAB05984.1|  200|Drosophila melanogaster protein (
           Drosophila melanogasterribosomal protein S6 gene and two
           potential alternativelyspliced proteins, complete cds.
           ).
          Length = 200

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 163 RWLQPLXTCFLARX-VVRKVKTVSAQTHRRLLQALTYVGLSKQPN 294
           R L+ + +CF  R   VRK KTV   T    + ALT V L K P+
Sbjct: 74  RLLKKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKKNPS 118


>L02074-2|AAB05983.1|  200|Drosophila melanogaster protein (
           Drosophila melanogasterribosomal protein S6 gene and two
           potential alternativelyspliced proteins, complete cds.
           ).
          Length = 200

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 163 RWLQPLXTCFLARX-VVRKVKTVSAQTHRRLLQALTYVGLSKQPN 294
           R L+ + +CF  R   VRK KTV   T    + ALT V L K P+
Sbjct: 74  RLLKKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKKNPS 118


>BT022735-1|AAY55151.1|  149|Drosophila melanogaster IP07614p
           protein.
          Length = 149

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 163 RWLQPLXTCFLARX-VVRKVKTVSAQTHRRLLQALTYVGLSKQPN 294
           R L+ + +CF  R   VRK KTV   T    + ALT V L K P+
Sbjct: 23  RLLKKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKKNPS 67


>BT022511-1|AAY54927.1|  147|Drosophila melanogaster IP07914p
           protein.
          Length = 147

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 163 RWLQPLXTCFLARX-VVRKVKTVSAQTHRRLLQALTYVGLSKQPN 294
           R L+ + +CF  R   VRK KTV   T    + ALT V L K P+
Sbjct: 21  RLLKKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKKNPS 65


>AE014298-1077|AAS65274.1|  135|Drosophila melanogaster CG33222-PA
           protein.
          Length = 135

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 163 RWLQPLXTCFLARX-VVRKVKTVSAQTHRRLLQALTYVGLSKQPN 294
           R L+ + +CF  R   VRK KTV   T    + ALT V L K P+
Sbjct: 9   RLLKKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKKNPS 53


>AE014298-1076|AAF46287.3|  135|Drosophila melanogaster CG11386-PA
           protein.
          Length = 135

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 163 RWLQPLXTCFLARX-VVRKVKTVSAQTHRRLLQALTYVGLSKQPN 294
           R L+ + +CF  R   VRK KTV   T    + ALT V L K P+
Sbjct: 9   RLLKKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKKNPS 53


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,774,126
Number of Sequences: 53049
Number of extensions: 529546
Number of successful extensions: 1750
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1750
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4250176164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)