Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_L05
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac...    32   0.13 
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    28   2.0  
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    27   3.6  
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    27   3.6  
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    27   4.7  
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    27   4.7  
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce...    26   8.2  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    26   8.2  

>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
           complex subunit Spp27|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 233

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
 Frame = +3

Query: 207 KSKRRIDVGSRHE*RTNS*IIRNQFDRNANPSKTESL*PRQPHR---GRAGTYSGSTRTQ 377
           + +R++D+ S H+   N+ I++  FD  A PS+ ESL  + P R   G+  T +G+   +
Sbjct: 30  EERRKVDL-SAHKKDLNALILKC-FDETAAPSEKESLEKQAPARKTKGKRATENGTEEGK 87

Query: 378 LPTRCTASRMHSAQ 419
            P + T  R    +
Sbjct: 88  KPAKRTRKRKEDGE 101


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 709 NDRYPEANDVDNLDNEIMDALTLETGNLPDLTEEQSSSL 825
           N  YP  + +D L  +  + + LE G LP+   E  S+L
Sbjct: 3   NKDYPLRSSMDELSTKNDNEIDLEKGPLPEYNSEDGSTL 41


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 709 NDRYPEANDVDNLDNEIMDALTLETGNLPDLTEEQSSSL 825
           N  YP  + +D L  +  + + LE G LP+   E  S+L
Sbjct: 3   NKYYPLRSSMDELSAKNDNEIDLEKGPLPEYNSEDGSTL 41


>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 368

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 709 NDRYPEANDVDNLDNEIMDALTLETGNLPDLTEEQSSSL 825
           N  YP  + +D L  +  + + LE G LP+   E  S+L
Sbjct: 3   NKYYPLRSSMDELSAKNDNEIDLEKGPLPEYNSEDGSTL 41


>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 872 INSCSDHSSSRRVDSFKDDDCSS 804
           + +CSDH+S R++     DD  S
Sbjct: 124 VKTCSDHASKRKIARSSSDDSES 146


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +1

Query: 592 IQDDIELKVLRHTYSVGSQ--IADHSDSLSHGQFYDTNI 702
           + D I +      YS+ S+  IAD  +++  GQ+YD N+
Sbjct: 114 VSDGISMGTTGMRYSLQSREIIADSIETVMQGQWYDANV 152


>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 205 ENQREESMSDLDMNEEPTRE 264
           ENQ E  +S+ D N+ PTR+
Sbjct: 249 ENQVENPVSNADANDSPTRQ 268


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +1

Query: 691  DTNIRHNDRYPEANDVDNLDNEIMDALTLETGNLPDLTEEQSSSLNESTRRDELWSEQLF 870
            DT +R + RY E ND+D+      + L LE      L ++Q     E   +D  W  + F
Sbjct: 855  DTRLRPDQRYRENNDLDH-----AEPLKLE------LEQKQRERRKEMEEKDIKWEPRWF 903

Query: 871  IENL 882
            + ++
Sbjct: 904  VPSV 907


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.131    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,272,759
Number of Sequences: 5004
Number of extensions: 65897
Number of successful extensions: 156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)