Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_L04
         (896 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    94   4e-18
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    71   5e-11
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    66   2e-09
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    62   1e-08
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    53   9e-06
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    42   0.021
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ...    39   0.20 
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    38   0.35 
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0...    38   0.46 
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    36   1.4  
UniRef50_Q12GC2 Cluster: Putative uncharacterized protein precur...    33   9.9  

>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 94.3 bits (224), Expect = 4e-18
 Identities = 56/95 (58%), Positives = 61/95 (64%)
 Frame = +3

Query: 519 VCVLGALPLPRSLTRCARSFGCGERYQLTQRR*YGYPXNQGITQERTCEQKASKRPGTVK 698
           +C  G +PLPRSLTR ARSFGCGERY+LT           G   E T  +  SK      
Sbjct: 30  ICDTGDIPLPRSLTRYARSFGCGERYRLTD--------GDGNFLEDT-RKTLSKEE---I 77

Query: 699 RPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKD 803
           RPR  RFSIGSAPLTSI K DAQ+ GGETRQDYKD
Sbjct: 78  RPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKD 112


>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 70.5 bits (165), Expect = 5e-11
 Identities = 35/44 (79%), Positives = 36/44 (81%)
 Frame = +3

Query: 675 SKRPGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDT 806
           SK+  T    R  RFSIGSAPLTSITKIDAQVRGGETRQDYKDT
Sbjct: 2   SKKQSTGTSQRRCRFSIGSAPLTSITKIDAQVRGGETRQDYKDT 45



 Score = 33.5 bits (73), Expect = 7.5
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +1

Query: 817 PLXAPSCALLFRPC 858
           PL APSCALLFRPC
Sbjct: 49  PLEAPSCALLFRPC 62


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 65.7 bits (153), Expect = 2e-09
 Identities = 31/38 (81%), Positives = 33/38 (86%)
 Frame = +3

Query: 693 VKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDT 806
           V+ PR  RFSIGSAPLTSITK DAQ+ GGETRQDYKDT
Sbjct: 44  VRGPRQSRFSIGSAPLTSITKSDAQISGGETRQDYKDT 81


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 62.5 bits (145), Expect = 1e-08
 Identities = 29/38 (76%), Positives = 29/38 (76%)
 Frame = -1

Query: 683 PFAGLLLTCSFLRYPLIXWITVLPPLSELIPLAAAERP 570
           P    LLTCSF  YPLI WITVLPPLSEL PLAA ERP
Sbjct: 19  PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 53.2 bits (122), Expect = 9e-06
 Identities = 30/57 (52%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +3

Query: 483 CINESANARGXAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPXNQGITQ 650
           CI + A AR  AV VL ALPL RS TRC RS GCG      +  R YG P  QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 41.9 bits (94), Expect = 0.021
 Identities = 19/20 (95%), Positives = 19/20 (95%)
 Frame = +2

Query: 602 HSKAVIRLSTXSGDNAGKNM 661
           HSKAVIRLST SGDNAGKNM
Sbjct: 40  HSKAVIRLSTESGDNAGKNM 59


>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
           Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
           Beggiatoa sp. SS
          Length = 114

 Score = 38.7 bits (86), Expect = 0.20
 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = +3

Query: 582 CGERYQLTQRR*YG--YPXNQGITQERTCEQKASKRPGTVKRPRCWRFSIGSAPLTSITK 755
           C  R Q    R  G  +P N  I  +R   + + + P T        F   S PLT+ITK
Sbjct: 22  CCHRQQCLLNRNLGLDHPRNHKIMHQRALIRNSPQTPRTYNYTLSSLFPYNSPPLTTITK 81

Query: 756 IDAQVRGGETRQDYKDT 806
           I  Q +  +T+ +YK T
Sbjct: 82  IYPQFKNTQTQHNYKYT 98


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 37.9 bits (84), Expect = 0.35
 Identities = 18/24 (75%), Positives = 20/24 (83%)
 Frame = -2

Query: 553 ERGSGRAPNTQTAXPRALADSLMQ 482
           +R +  APNTQTA PRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_UPI00015C640B Cluster: hypothetical protein
           CKO_pCKO2p07168; n=1; Citrobacter koseri ATCC
           BAA-895|Rep: hypothetical protein CKO_pCKO2p07168 -
           Citrobacter koseri ATCC BAA-895
          Length = 99

 Score = 37.5 bits (83), Expect = 0.46
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = -1

Query: 896 PEGRKADXYXVNXQGRNRRAHEGAXRGETP 807
           P+G+KA+      QGRNRRAHEGA   ++P
Sbjct: 57  PKGKKAEQVSGKRQGRNRRAHEGAAGEKSP 86


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 35.9 bits (79), Expect = 1.4
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +1

Query: 481 SALMNRPTXGXRRFAYW 531
           +ALMNRPT G RRFAYW
Sbjct: 25  AALMNRPTRGERRFAYW 41


>UniRef50_Q12GC2 Cluster: Putative uncharacterized protein
           precursor; n=2; Polaromonas|Rep: Putative
           uncharacterized protein precursor - Polaromonas sp.
           (strain JS666 / ATCC BAA-500)
          Length = 268

 Score = 33.1 bits (72), Expect = 9.9
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -1

Query: 692 GSWPFAGLLLTCSFLRYP---LIXWITVLPPLSELIPLAAAERP 570
           G W  +G  L    L++    LI W+  LPPL++ IP+A+ + P
Sbjct: 158 GVWLSSGNALPWGLLQFGGMGLIVWLACLPPLADEIPMASGDSP 201


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 645,107,511
Number of Sequences: 1657284
Number of extensions: 10525579
Number of successful extensions: 24606
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 23881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24601
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 81161904978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)