Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_L01
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr 1|||Ma...    91   3e-19
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    31   0.17 
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    27   3.6  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    26   8.2  

>SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 127

 Score = 90.6 bits (215), Expect = 3e-19
 Identities = 43/124 (34%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
 Frame = +2

Query: 152 KSYVDKQLMASSCVTKAAIAGHXGN-VWAKSEGFEISKXEVAKIVAGFENESLLTSGGVT 328
           ++YVD  L+ +  + +AAI    G+ VWA S GF +S  E+  + AGF++   +   G+ 
Sbjct: 4   QAYVDTSLLGTGKIDRAAIVSRAGDSVWAASAGFNLSPQEIQGLAAGFQDPPSMFGTGII 63

Query: 329 IAGTRYIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLI 508
           +AG +YI +      I  KL K G+ C+ T+  +++S Y E   P +AA + E L +YL+
Sbjct: 64  LAGQKYITIRAEGRSIYGKLQKEGIICVATKLCILVSHYPETTLPGEAAKITEALADYLV 123

Query: 509 TCGY 520
             GY
Sbjct: 124 GVGY 127


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 14/40 (35%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
 Frame = +3

Query: 678 SLVCTCDYFVD--SGPFLYAHRLLKILLLHNEXICIKILL 791
           +++C C+YF+D  +GPFL +++ L +L L      ++I+L
Sbjct: 322 AIMCRCEYFLDMLAGPFLESNQELPVLSLPFSSSVVEIVL 361


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = -2

Query: 366 SVPLR*MYRVPAIVTPPLVSSDSFSKPATIFATSXFEISKPSDFAHTLPX*PAMAAFVTQ 187
           +VPL   Y    + T   + S   SKP+    +S  + + P +  H++P   ++A   + 
Sbjct: 487 NVPLYPAYNSSPVQTRTSLFSSRLSKPSNPIVSSVSQANAPKNALHSMPSPTSLANLPSN 546

Query: 186 L 184
           L
Sbjct: 547 L 547


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 225 MCGQSRKASKFQKXKWQR 278
           MC  S++   FQK KW R
Sbjct: 19  MCNYSKRLDTFQKKKWPR 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,156,979
Number of Sequences: 5004
Number of extensions: 63133
Number of successful extensions: 137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)