Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_L01
         (886 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55375-5|AAC69045.1|  126|Caenorhabditis elegans Profilin protei...    77   1e-14
AY530910-1|AAT01435.1|  126|Caenorhabditis elegans profilin-3 pr...    77   1e-14
U40941-2|AAA81708.3|  131|Caenorhabditis elegans Profilin protei...    58   6e-09
AY530909-1|AAT01434.1|  131|Caenorhabditis elegans profilin-2 pr...    58   6e-09

>U55375-5|AAC69045.1|  126|Caenorhabditis elegans Profilin protein 3
           protein.
          Length = 126

 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 41/120 (34%), Positives = 62/120 (51%)
 Frame = +2

Query: 161 VDKQLMASSCVTKAAIAGHXGNVWAKSEGFEISKXEVAKIVAGFENESLLTSGGVTIAGT 340
           ++  L+ S  V+KAAI G  G VWAKS+ F IS  E       F +   L   G+ + G 
Sbjct: 7   INNNLIGSGNVSKAAILGFDGAVWAKSDNFNISVEEAVAAGKAFTSLDALLGTGLRLEGQ 66

Query: 341 RYIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCGY 520
           +++ L+  +  I  K G  G    KT QAV+IS+YE+ +QP+  +     L +Y  +  Y
Sbjct: 67  KFLVLNADNDRIIGKQGGSGFFIYKTIQAVIISIYEKGLQPEMCSKTTGALADYFRSIKY 126


>AY530910-1|AAT01435.1|  126|Caenorhabditis elegans profilin-3
           protein.
          Length = 126

 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 41/120 (34%), Positives = 62/120 (51%)
 Frame = +2

Query: 161 VDKQLMASSCVTKAAIAGHXGNVWAKSEGFEISKXEVAKIVAGFENESLLTSGGVTIAGT 340
           ++  L+ S  V+KAAI G  G VWAKS+ F IS  E       F +   L   G+ + G 
Sbjct: 7   INNNLIGSGNVSKAAILGFDGAVWAKSDNFNISVEEAVAAGKAFTSLDALLGTGLRLEGQ 66

Query: 341 RYIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCGY 520
           +++ L+  +  I  K G  G    KT QAV+IS+YE+ +QP+  +     L +Y  +  Y
Sbjct: 67  KFLVLNADNDRIIGKQGGSGFFIYKTIQAVIISIYEKGLQPEMCSKTTGALADYFRSIKY 126


>U40941-2|AAA81708.3|  131|Caenorhabditis elegans Profilin protein 2
           protein.
          Length = 131

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
 Frame = +2

Query: 158 YVDKQLMASSCVTKAAIAGHXGNVWAKS---EGFEISKXEVAKIVAGFENESLLTSGGVT 328
           Y+      S  + +AAI G  G+VWA+S     F  ++ E+ +  A F + + +   G  
Sbjct: 7   YIKLLFGKSPAIKRAAIIGSDGSVWARSGDANAFRATEVELKRFAALFNDINSVPGTGAD 66

Query: 329 IAGTRYIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYE-EPIQPQQAASVVEKLGEYL 505
           +    YI     + +I  K  + G    KT QA+VI++YE +  Q     + VE + +YL
Sbjct: 67  LEEIHYIVPRVEEKLIFGKKEQTGFFAAKTNQAIVIAMYEGDNAQSASVRAGVEYIAQYL 126

Query: 506 ITCGY 520
            + GY
Sbjct: 127 ASSGY 131


>AY530909-1|AAT01434.1|  131|Caenorhabditis elegans profilin-2
           protein.
          Length = 131

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
 Frame = +2

Query: 158 YVDKQLMASSCVTKAAIAGHXGNVWAKS---EGFEISKXEVAKIVAGFENESLLTSGGVT 328
           Y+      S  + +AAI G  G+VWA+S     F  ++ E+ +  A F + + +   G  
Sbjct: 7   YIKLLFGKSPAIKRAAIIGSDGSVWARSGDANAFRATEVELKRFAALFNDINSVPGTGAD 66

Query: 329 IAGTRYIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYE-EPIQPQQAASVVEKLGEYL 505
           +    YI     + +I  K  + G    KT QA+VI++YE +  Q     + VE + +YL
Sbjct: 67  LEEIHYIVPRVEEKLIFGKKEQTGFFAAKTNQAIVIAMYEGDNAQSASVRAGVEYIAQYL 126

Query: 506 ITCGY 520
            + GY
Sbjct: 127 ASSGY 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,710,173
Number of Sequences: 27780
Number of extensions: 361978
Number of successful extensions: 770
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)