Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_K24
         (1123 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...    27   3.6  
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...    27   4.8  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    23   8.0  

>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 125 KNIVHTXTQXNWYDVKDMXXXNXRQVXHNLXNRT 226
           K +V   ++ +WYD+K       + V   L NRT
Sbjct: 18  KRVVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRT 51


>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 125 KNIVHTXTQXNWYDVKDMXXXNXRQVXHNLXNRT 226
           K +V   ++  WYD+K       + V   L NRT
Sbjct: 18  KRVVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRT 51


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 22.6 bits (46), Expect(2) = 8.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 406 GXPPPXPPP 380
           G PPP PPP
Sbjct: 304 GLPPPPPPP 312



 Score = 21.8 bits (44), Expect(2) = 8.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 400 PPPXPPPXXXF 368
           PPP PPP   F
Sbjct: 308 PPPPPPPSNDF 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,301,713
Number of Sequences: 5004
Number of extensions: 8245
Number of successful extensions: 57
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 595662418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)