Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_K24
         (1123 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal prot...    31   3.8  
AY070949-1|AAL48571.1|  217|Drosophila melanogaster RE04220p pro...    31   3.8  
AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal pr...    31   3.8  
AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA, i...    31   3.8  

>Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal protein
           S3a protein.
          Length = 270

 Score = 30.7 bits (66), Expect = 3.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 125 KNIVHTXTQXNWYDVKDMXXXNXRQVXHNLXNRT 226
           K +V   ++ +WYDVK       RQ+   L NRT
Sbjct: 19  KKVVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRT 52


>AY070949-1|AAL48571.1|  217|Drosophila melanogaster RE04220p
           protein.
          Length = 217

 Score = 30.7 bits (66), Expect = 3.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 125 KNIVHTXTQXNWYDVKDMXXXNXRQVXHNLXNRT 226
           K +V   ++ +WYDVK       RQ+   L NRT
Sbjct: 19  KKVVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRT 52


>AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal
           protein S3a protein.
          Length = 268

 Score = 30.7 bits (66), Expect = 3.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 125 KNIVHTXTQXNWYDVKDMXXXNXRQVXHNLXNRT 226
           K +V   ++ +WYDVK       RQ+   L NRT
Sbjct: 19  KKVVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRT 52


>AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA,
           isoform A protein.
          Length = 268

 Score = 30.7 bits (66), Expect = 3.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 125 KNIVHTXTQXNWYDVKDMXXXNXRQVXHNLXNRT 226
           K +V   ++ +WYDVK       RQ+   L NRT
Sbjct: 19  KKVVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRT 52


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,675,133
Number of Sequences: 53049
Number of extensions: 181642
Number of successful extensions: 2957
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2031
length of database: 24,988,368
effective HSP length: 86
effective length of database: 20,426,154
effective search space used: 5862306198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)