Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_K22
         (879 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0912 - 22536181-22537011                                         33   0.30 
02_05_0686 - 30900748-30902167,30903442-30904742                       32   0.70 
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703...    30   2.1  
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25...    29   4.9  
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    29   6.5  
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           29   6.5  

>08_02_0912 - 22536181-22537011
          Length = 276

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 15/44 (34%), Positives = 18/44 (40%)
 Frame = +3

Query: 252 PPPXKXXXXXYFXPKKXXGPPPPPXXXKKXGGVFXKXPPPXKKK 383
           PPP       +   +K   PP PP   +    VF   PPP  KK
Sbjct: 127 PPPLVADAPRHSKKRKAPPPPSPPREEEAEDAVFQTTPPPSHKK 170


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 18/42 (42%), Positives = 18/42 (42%)
 Frame = +3

Query: 252 PPPXKXXXXXYFXPKKXXGPPPPPXXXKKXGGVFXKXPPPXK 377
           PPP K        P K   PPPPP    K GG     PPP K
Sbjct: 347 PPPAKGPPPP--PPPKGPSPPPPPPPGGKKGG---PPPPPPK 383



 Score = 31.1 bits (67), Expect = 1.2
 Identities = 19/47 (40%), Positives = 19/47 (40%)
 Frame = +1

Query: 238 KXKXPPPPXKXXXXXIXPXKNXXXPPPPXFXXKKXGXFXXKXPPPXK 378
           K   PPPP K       P K    PPPP    KK G      PPP K
Sbjct: 342 KGPPPPPPAKGPPPP-PPPKGPSPPPPPPPGGKKGG----PPPPPPK 383


>01_01_0892 +
           7037384-7037795,7038447-7038962,7039507-7039593,
           7039698-7039768,7040148-7040224,7040380-7040527,
           7040973-7041134,7041374-7041694
          Length = 597

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
 Frame = +3

Query: 252 PPPXKXXXXXYFXPKKXXGPPPPPXXXKKXGGVF----XKXPPP 371
           PPP       Y+       PPPPP      GGV+       PPP
Sbjct: 112 PPPPPPHLLHYYGHPPPPPPPPPPFKGDHYGGVYQNWQQNGPPP 155


>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
            257038-257169,257297-258589,259133-259837,260465-260549,
            260604-260650,260810-260900,261838-262101,262195-262309,
            262455-262570,262713-262847,262969-263036,263292-263411
          Length = 1235

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +3

Query: 291  PKKXXGPPPPPXXXKKXGGVFXKXPPP 371
            P +  G PPPP    K GG     PPP
Sbjct: 922  PPRPPGAPPPPPPPGKPGGPPPPPPPP 948


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/40 (32%), Positives = 14/40 (35%)
 Frame = +3

Query: 252 PPPXKXXXXXYFXPKKXXGPPPPPXXXKKXGGVFXKXPPP 371
           PPP        F P     PPPPP   +         PPP
Sbjct: 550 PPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPP 589



 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/40 (30%), Positives = 13/40 (32%)
 Frame = +3

Query: 252 PPPXKXXXXXYFXPKKXXGPPPPPXXXKKXGGVFXKXPPP 371
           PPP       +  P     PPPPP             PPP
Sbjct: 551 PPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPP 590


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/40 (37%), Positives = 16/40 (40%)
 Frame = +3

Query: 252 PPPXKXXXXXYFXPKKXXGPPPPPXXXKKXGGVFXKXPPP 371
           PPP          P    GPPPPP    + GG     PPP
Sbjct: 351 PPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGG----GPPP 386


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,230,432
Number of Sequences: 37544
Number of extensions: 459912
Number of successful extensions: 1220
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)