Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_K18
(982 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0118 + 14597863-14597929,14598844-14599806,14599909-145999... 34 0.20
10_01_0129 + 1535823-1537196 31 1.1
02_05_0002 - 24849189-24849825,24850267-24850328 25 1.9
11_06_0610 - 25449085-25453284 30 2.5
02_05_0686 - 30900748-30902167,30903442-30904742 30 2.5
07_01_0479 + 3606663-3607448 29 5.7
02_03_0381 - 18339290-18339994,18340083-18340103,18341925-183419... 29 5.7
09_04_0487 - 18014469-18014660,18014935-18015016,18015297-180155... 28 9.9
09_02_0349 - 7632140-7632234,7632348-7632449,7632864-7632962,763... 28 9.9
08_02_0450 - 17266977-17267165,17268017-17268053,17268139-172695... 28 9.9
04_02_0026 + 8708765-8710935,8711021-8711272,8711353-8711463,871... 28 9.9
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 28 9.9
>03_03_0118 +
14597863-14597929,14598844-14599806,14599909-14599936,
14600288-14600666
Length = 478
Score = 33.9 bits (74), Expect = 0.20
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = +1
Query: 289 GGXPPXXGGGXTXLLGDXGXXPXGLGPPXRAXGXG 393
GG P GG T LG G P G GPP G G
Sbjct: 402 GGFTPPAGGFGTPPLGGFGTPPSGFGPPGSFNGSG 436
>10_01_0129 + 1535823-1537196
Length = 457
Score = 31.5 bits (68), Expect = 1.1
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = -3
Query: 419 KGXXAGGGXPXPXARYGG--PKPXGXXPXSPKXXVXPPPXXG-GXPP 288
+G GGG P +R P+P G P S + PP G G PP
Sbjct: 22 RGSPPGGGSPLNSSRRSSRRPRPSGSSPTSSPGQIRSPPDDGDGQPP 68
>02_05_0002 - 24849189-24849825,24850267-24850328
Length = 232
Score = 24.6 bits (51), Expect(2) = 1.9
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -3
Query: 515 GGXPXPXPPPP 483
GG P P PPPP
Sbjct: 213 GGHPHPPPPPP 223
Score = 24.6 bits (51), Expect(2) = 1.9
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = -3
Query: 506 PXPXPPPPXXGRXC 465
P P PPPP G C
Sbjct: 219 PPPPPPPPSAGAAC 232
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 30.3 bits (65), Expect = 2.5
Identities = 17/44 (38%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Frame = -3
Query: 398 GXPXPXARYGGPKPX--GXXPXSPKXXVXPPPXXGGXPPXXXXP 273
G P A YG P P G P SP+ PPP PP P
Sbjct: 500 GVTSPPAEYGAPPPPSSGWLPKSPERKKAPPPQ--AEPPTEYSP 541
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 30.3 bits (65), Expect = 2.5
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = -2
Query: 378 PXRGPQTXRAXPXVPQKXRXPPPXXRGXPPXP 283
P P A P P K PPP +G PP P
Sbjct: 326 PPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPP 357
Score = 29.9 bits (64), Expect = 3.2
Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Frame = -3
Query: 392 PXPXARYGGPKPXGXXPXSP-KXXVXPPPXXGGXPPXXXXP 273
P P A P P G P P K PPP G PP P
Sbjct: 330 PPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPP 370
Score = 29.1 bits (62), Expect = 5.7
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = -2
Query: 378 PXRGPQTXRAXPXVPQKXRXPPPXXRGXPPXP 283
P P P P K PPP +G PP P
Sbjct: 317 PPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPP 348
>07_01_0479 + 3606663-3607448
Length = 261
Score = 29.1 bits (62), Expect = 5.7
Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Frame = +1
Query: 292 GXPPXXGGGXTXLLGDXGXXPXGLGPPXRAXG-XGXPPPAXXP 417
G PP GG G P +GPP G G PPP P
Sbjct: 192 GVPPAFPGGPPPPPGPFMRGPPPMGPPQVRPGMPGGPPPGMRP 234
Score = 28.3 bits (60), Expect = 9.9
Identities = 16/45 (35%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Frame = -3
Query: 404 GGGXPXPXARYGGPKPXGXXPXSPKXXVXPPP-XXGGXPPXXXXP 273
GG P P GP P G P PPP G PP P
Sbjct: 199 GGPPPPPGPFMRGPPPMGPPQVRPGMPGGPPPGMRPGMPPPPFRP 243
>02_03_0381 -
18339290-18339994,18340083-18340103,18341925-18341982,
18342084-18342220,18342480-18342650
Length = 363
Score = 29.1 bits (62), Expect = 5.7
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = -3
Query: 386 PXARYGGPKPXGXXPXSPKXXVXPPPXXGGXPP 288
P + Y GP P P SP V PP PP
Sbjct: 187 PMSGYRGPPPGAPPPWSPHSGVPPPWNPHSAPP 219
>09_04_0487 -
18014469-18014660,18014935-18015016,18015297-18015548,
18015634-18017789
Length = 893
Score = 28.3 bits (60), Expect = 9.9
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Frame = -2
Query: 378 PXRGPQTXRAXPXVPQKXRXP--PPXXRGXPPXPXXAXV 268
P PQ +A P P K P PP + PP P A V
Sbjct: 514 PLPAPQPVQASPTSPAKQHAPPAPPSVQTSPPTPQSALV 552
>09_02_0349 -
7632140-7632234,7632348-7632449,7632864-7632962,
7633517-7633622,7633897-7633978,7634068-7634178,
7634259-7634510,7634596-7635688,7636157-7636829,
7636920-7637117
Length = 936
Score = 28.3 bits (60), Expect = 9.9
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Frame = -2
Query: 378 PXRGPQTXRAXPXVPQKXRXP--PPXXRGXPPXPXXAXV 268
P PQ +A P P K P PP + PP P A V
Sbjct: 450 PLPAPQPVQASPTSPAKQHAPPAPPSVQTSPPTPQSALV 488
>08_02_0450 -
17266977-17267165,17268017-17268053,17268139-17269514,
17285369-17286055,17286146-17286343
Length = 828
Score = 28.3 bits (60), Expect = 9.9
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Frame = -2
Query: 378 PXRGPQTXRAXPXVPQKXRXP--PPXXRGXPPXPXXAXV 268
P PQ +A P P K P PP + PP P A V
Sbjct: 560 PLPAPQPVQASPTSPAKKHAPPAPPSVQTSPPTPQSALV 598
>04_02_0026 +
8708765-8710935,8711021-8711272,8711353-8711463,
8711553-8711634,8711909-8712100
Length = 935
Score = 28.3 bits (60), Expect = 9.9
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Frame = -2
Query: 378 PXRGPQTXRAXPXVPQKXRXP--PPXXRGXPPXPXXAXV 268
P PQ +A P P K P PP + PP P A V
Sbjct: 519 PLPAPQPVQASPTSPAKQHAPPAPPSVQTSPPTPQSALV 557
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 28.3 bits (60), Expect = 9.9
Identities = 14/43 (32%), Positives = 16/43 (37%)
Frame = -3
Query: 416 GXXAGGGXPXPXARYGGPKPXGXXPXSPKXXVXPPPXXGGXPP 288
G +G P P A P+P G P P GG PP
Sbjct: 344 GAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPP 386
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,210,315
Number of Sequences: 37544
Number of extensions: 248461
Number of successful extensions: 1131
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2858396560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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