Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_K18
(982 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 38 0.008
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 38 0.008
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 38 0.008
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 0.54
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 0.54
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 0.54
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 31 1.7
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 31 1.7
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 30 2.2
AC024751-12|ABF71717.1| 301|Caenorhabditis elegans Collagen pro... 30 2.9
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 3.8
Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical pr... 29 6.7
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 6.7
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 6.7
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 28 8.8
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 28 8.8
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 28 8.8
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 38.3 bits (85), Expect = 0.008
Identities = 27/81 (33%), Positives = 28/81 (34%)
Frame = -3
Query: 530 GAXXRGGXPXPXPPPPXXGRXCXXIXXXXXXXPAWEXKGXXAGGGXPXPXARYGGPKPXG 351
G+ G P PPPP G P AGG P P A G P P
Sbjct: 245 GSPPLAGSGSP-PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRA--GSPPPPP 301
Query: 350 XXPXSPKXXVXPPPXXGGXPP 288
SP PPP GG PP
Sbjct: 302 PPRGSPPTGSLPPPQAGGSPP 322
Score = 32.7 bits (71), Expect = 0.41
Identities = 23/77 (29%), Positives = 24/77 (31%), Gaps = 1/77 (1%)
Frame = -3
Query: 500 PXPPPPXXGRXCXXIXXXXXXXPAWEXKGXXAGGGXPXPXARYGGPKPXGXXPXSPKXXV 321
P PPPP G PA G P P P P G P P+
Sbjct: 237 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGS 296
Query: 320 XPPPXX-GGXPPXXXXP 273
PPP G PP P
Sbjct: 297 PPPPPPPRGSPPTGSLP 313
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 38.3 bits (85), Expect = 0.008
Identities = 27/81 (33%), Positives = 28/81 (34%)
Frame = -3
Query: 530 GAXXRGGXPXPXPPPPXXGRXCXXIXXXXXXXPAWEXKGXXAGGGXPXPXARYGGPKPXG 351
G+ G P PPPP G P AGG P P A G P P
Sbjct: 266 GSPPLAGSGSP-PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRA--GSPPPPP 322
Query: 350 XXPXSPKXXVXPPPXXGGXPP 288
SP PPP GG PP
Sbjct: 323 PPRGSPPTGSLPPPQAGGSPP 343
Score = 32.7 bits (71), Expect = 0.41
Identities = 23/77 (29%), Positives = 24/77 (31%), Gaps = 1/77 (1%)
Frame = -3
Query: 500 PXPPPPXXGRXCXXIXXXXXXXPAWEXKGXXAGGGXPXPXARYGGPKPXGXXPXSPKXXV 321
P PPPP G PA G P P P P G P P+
Sbjct: 258 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGS 317
Query: 320 XPPPXX-GGXPPXXXXP 273
PPP G PP P
Sbjct: 318 PPPPPPPRGSPPTGSLP 334
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 38.3 bits (85), Expect = 0.008
Identities = 27/81 (33%), Positives = 28/81 (34%)
Frame = -3
Query: 530 GAXXRGGXPXPXPPPPXXGRXCXXIXXXXXXXPAWEXKGXXAGGGXPXPXARYGGPKPXG 351
G+ G P PPPP G P AGG P P A G P P
Sbjct: 251 GSPPLAGSGSP-PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRA--GSPPPPP 307
Query: 350 XXPXSPKXXVXPPPXXGGXPP 288
SP PPP GG PP
Sbjct: 308 PPRGSPPTGSLPPPQAGGSPP 328
Score = 32.7 bits (71), Expect = 0.41
Identities = 23/77 (29%), Positives = 24/77 (31%), Gaps = 1/77 (1%)
Frame = -3
Query: 500 PXPPPPXXGRXCXXIXXXXXXXPAWEXKGXXAGGGXPXPXARYGGPKPXGXXPXSPKXXV 321
P PPPP G PA G P P P P G P P+
Sbjct: 243 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGS 302
Query: 320 XPPPXX-GGXPPXXXXP 273
PPP G PP P
Sbjct: 303 PPPPPPPRGSPPTGSLP 319
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 32.3 bits (70), Expect = 0.54
Identities = 17/45 (37%), Positives = 18/45 (40%)
Frame = -3
Query: 407 AGGGXPXPXARYGGPKPXGXXPXSPKXXVXPPPXXGGXPPXXXXP 273
AGG P G P P G P + PPP GG PP P
Sbjct: 700 AGGSSALPPITGGPPPPPGLPPIT--GGPPPPPPPGGLPPITGGP 742
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = -3
Query: 398 GXPXPXARYGGPKPXGXXPXSPKXXVXPPPXXGGXPPXXXXP 273
G P P GG P P P PP GG PP P
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 765
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = -3
Query: 401 GGXPXPXARYGGPKPXGXXPXSPKXXVXPPPXXGGXPPXXXXP 273
GG P P P G P PPP GG PP P
Sbjct: 733 GGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP 775
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 32.3 bits (70), Expect = 0.54
Identities = 17/45 (37%), Positives = 18/45 (40%)
Frame = -3
Query: 407 AGGGXPXPXARYGGPKPXGXXPXSPKXXVXPPPXXGGXPPXXXXP 273
AGG P G P P G P + PPP GG PP P
Sbjct: 700 AGGSSALPPITGGPPPPPGLPPIT--GGPPPPPPPGGLPPITGGP 742
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = -3
Query: 398 GXPXPXARYGGPKPXGXXPXSPKXXVXPPPXXGGXPPXXXXP 273
G P P GG P P P PP GG PP P
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 765
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = -3
Query: 401 GGXPXPXARYGGPKPXGXXPXSPKXXVXPPPXXGGXPPXXXXP 273
GG P P P G P PPP GG PP P
Sbjct: 733 GGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP 775
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 32.3 bits (70), Expect = 0.54
Identities = 17/45 (37%), Positives = 18/45 (40%)
Frame = -3
Query: 407 AGGGXPXPXARYGGPKPXGXXPXSPKXXVXPPPXXGGXPPXXXXP 273
AGG P G P P G P + PPP GG PP P
Sbjct: 283 AGGSSALPPITGGPPPPPGLPPIT--GGPPPPPPPGGLPPITGGP 325
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = -3
Query: 398 GXPXPXARYGGPKPXGXXPXSPKXXVXPPPXXGGXPPXXXXP 273
G P P GG P P P PP GG PP P
Sbjct: 307 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 348
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = -3
Query: 401 GGXPXPXARYGGPKPXGXXPXSPKXXVXPPPXXGGXPPXXXXP 273
GG P P P G P PPP GG PP P
Sbjct: 316 GGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP 358
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 30.7 bits (66), Expect = 1.7
Identities = 16/37 (43%), Positives = 17/37 (45%)
Frame = +1
Query: 292 GXPPXXGGGXTXLLGDXGXXPXGLGPPXRAXGXGXPP 402
G PP GGG GD P G+G P G G PP
Sbjct: 153 GPPPLMGGG-----GDPRGPPGGMGGPPGHGGMGGPP 184
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 30.7 bits (66), Expect = 1.7
Identities = 16/37 (43%), Positives = 17/37 (45%)
Frame = +1
Query: 292 GXPPXXGGGXTXLLGDXGXXPXGLGPPXRAXGXGXPP 402
G PP GGG GD P G+G P G G PP
Sbjct: 433 GPPPLMGGG-----GDPRGPPGGMGGPPGHGGMGGPP 464
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Frame = +1
Query: 292 GXPPXXGGGXTXLLGDXGXXPXGLG-PPXRAXGXGXPPPAXXP 417
G PP G G G P G G PP G PPP P
Sbjct: 410 GPPPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAYGPPPTGFP 452
>AC024751-12|ABF71717.1| 301|Caenorhabditis elegans Collagen
protein 47 protein.
Length = 301
Score = 29.9 bits (64), Expect = 2.9
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 895 PRXPXXXPPPXGAPQRXXHPGXSXPPGE 812
P P P G+P +PG S PPGE
Sbjct: 130 PAGPPGSPGDHGSPGEPGYPGPSGPPGE 157
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/43 (32%), Positives = 15/43 (34%)
Frame = -3
Query: 401 GGXPXPXARYGGPKPXGXXPXSPKXXVXPPPXXGGXPPXXXXP 273
GG P P G + P PPP GG PP P
Sbjct: 1557 GGLPPPHGGMNGWRGGPPPPRGGSHCQGPPPLMGGPPPRLGMP 1599
>Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical
protein T05A1.2 protein.
Length = 300
Score = 28.7 bits (61), Expect = 6.7
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -1
Query: 895 PRXPXXXPPPXGAPQRXXHPGXSXPPG 815
P P P P GAP PG PPG
Sbjct: 144 PPCPACPPGPPGAPGAPGKPGSEGPPG 170
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = -3
Query: 404 GGGXPXPXARYGGPKPXGXXPXSPKXXVXPPPXXGGXPP 288
GG P P RY P P P PP G PP
Sbjct: 345 GGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPP 383
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = -3
Query: 404 GGGXPXPXARYGGPKPXGXXPXSPKXXVXPPPXXGGXPP 288
GG P P RY P P P PP G PP
Sbjct: 355 GGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPP 393
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 886 PXXXPPPXGAPQRXXHPGXSXPPGE 812
P P P GAP +PG + PPG+
Sbjct: 253 PPGPPGPAGAPGPDGNPGTAGPPGK 277
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 886 PXXXPPPXGAPQRXXHPGXSXPPGE 812
P P P GAP +PG + PPG+
Sbjct: 252 PPGPPGPAGAPGPDGNPGTAGPPGK 276
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = -1
Query: 895 PRXPXXXPPPXGAPQRXXHPGXSXPPG 815
P P P P G P PG + PPG
Sbjct: 96 PAKPVCPPGPPGPPGEPGQPGSAGPPG 122
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,415,840
Number of Sequences: 27780
Number of extensions: 174790
Number of successful extensions: 1378
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2552786072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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