Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_K17
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe...    29   1.1  
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|...    29   1.1  
SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid protease|Schi...    26   6.1  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    26   8.1  

>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 239 FYSRNRWVEYSDKYYLNYDGSQVPAEW 319
           F  +  WV Y+D   LNYDGS     W
Sbjct: 139 FEKKAAWVLYADIICLNYDGSAFDYAW 165


>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 381

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = +2

Query: 140 ASLYKLYRQDDVKDGVLVGEDKYGNKYYENPRFFYSRNRWVEYSDKYYLNYDGSQVP-AE 316
           +S+  L +   VKD  +   D  G+   +N +   S N    Y +K+   YD   +P + 
Sbjct: 47  SSMLHLSKGLTVKDVRIFFHDSIGSTLLKNRKKLNSENELPNYGEKFTHKYDNQDMPDSV 106

Query: 317 WFGWLHYKTDLPP 355
           W   ++  T   P
Sbjct: 107 WLAKVNGMTKSDP 119


>SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid
           protease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 298

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 390 WRTTPKIFLARPPNMCRTVRPDPKWKP 470
           W+   K F  RP      ++P P WKP
Sbjct: 11  WKFGQKRFYYRPWIRIENIKPTPLWKP 37


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = +2

Query: 200 DKYGNKYYENPRFFYSRNRWVEYSDKYYLNYDGSQVPAE 316
           DKY    Y      YS N W+++  K+    +  + P +
Sbjct: 565 DKYNKDIYIGSTVCYSPNEWLDFFSKFQQPREALKFPED 603


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,174,486
Number of Sequences: 5004
Number of extensions: 70193
Number of successful extensions: 189
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)