Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_K15
         (925 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    29   0.70 
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    29   0.93 
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    27   3.7  
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom...    27   4.9  
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi...    26   8.6  

>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
 Frame = +3

Query: 300 ERRNHKVPHDLRNVENPSQRPEHRDPQD---YSALNERK----SQDKHTENLXPNLXNSH 458
           ++ +HK P D  + + P  +  H+ P+D   +    +++     ++KH E    N+ +SH
Sbjct: 379 DKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHQGPKEKHNERPEQNMQSSH 438

Query: 459 K 461
           +
Sbjct: 439 E 439



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +3

Query: 300 ERRNHKVPHDLRNVENPSQRPEHRDPQDYSALNERKSQDKH 422
           ++ +HK P D  + + P  +  H+ P+D       K ++ H
Sbjct: 361 DKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHH 401



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +3

Query: 300 ERRNHKVPHDLRNVENPSQRPEHRDPQDYSALNERKSQDKH 422
           ++ +HK P D  + + P  +  H+ P+D       K ++ H
Sbjct: 370 DKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHH 410


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
 Frame = +3

Query: 279 DLGDLIIERRN----HKVPHD------LRNVENPSQRPEHRD-PQDYSALNERKSQDKHT 425
           DL D + E+RN    H   HD      +RN+E+ + + E  D   D   +NE++S DK  
Sbjct: 33  DLNDSLDEQRNAYNEHCKNHDQQPSQQVRNMEDEANQYEQTDSSSDQEVMNEKQSLDKEN 92

Query: 426 EN 431
            N
Sbjct: 93  RN 94


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/57 (22%), Positives = 29/57 (50%)
 Frame = +3

Query: 294 IIERRNHKVPHDLRNVENPSQRPEHRDPQDYSALNERKSQDKHTENLXPNLXNSHKS 464
           ++E+R + +  D ++ E   +   HR  QD S   ER   ++H+ +   +   S+++
Sbjct: 153 LMEKRKYSLDSDRKSKERRHRDRHHRSNQDRS--RERSDNEQHSSDKREHSRRSYRN 207


>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 270 CSFHQENLHHNNHSRFRSHITVFEDSL 190
           CS +++ L H +H   + HI + E +L
Sbjct: 257 CSINKDALTHRSHESLQQHIELLESTL 283


>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
           Gap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 766

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = +2

Query: 50  IMFAVKHGVDSTVNLGLFILPERELSFLSYQ*CSENPGNTIYKLGSSKLSSKTVIWLRNR 229
           +++ +   ++S V    F L +REL  L  Q  S++  N + +     L SK  + ++NR
Sbjct: 31  VLYTIDLDMESDVEDAFFHL-DRELHDLKQQISSQSKQNFVLERDVRYLDSKIALLIQNR 89

Query: 230 L 232
           +
Sbjct: 90  M 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,612,602
Number of Sequences: 5004
Number of extensions: 44639
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)