Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_K14
(913 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.074
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 0.14
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 0.48
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 0.59
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 2.8
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 3.7
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.9
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 4.9
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 4.9
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 4.9
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.7 bits (71), Expect = 0.074
Identities = 16/43 (37%), Positives = 17/43 (39%)
Frame = -2
Query: 501 KXPPPPPPPPXXXKXXXXXXXXXXXXFXFXPPPXPPPXSXXKG 373
K PPPPPPP + PPP PPP S G
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSS--LPPPPPPPRSNAAG 349
Score = 30.3 bits (65), Expect = 0.40
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = -2
Query: 300 PPXLGXGXP--PPXXXFFFGXPPLPXXLPXFPPPPP 199
PP L G P PP PPLP +P PP PP
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471
Score = 29.5 bits (63), Expect = 0.69
Identities = 25/100 (25%), Positives = 26/100 (26%), Gaps = 4/100 (4%)
Frame = -2
Query: 489 PPPPPPXXXKXXXXXXXXXXXXFXFXPPPXPPPXSXXKGFFXXXXFXXXG----PXXFFF 322
PPPPPP PP PPP + P
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTP 420
Query: 321 FFFXXXPPPXLGXGXPPPXXXFFFGXPPLPXXLPXFPPPP 202
PP L PP PPLP P PP P
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 276 PPPXXXFFFGXPPLPXXLPXFPPPPP 199
PPP G PLP PPPPP
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPP 365
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 28.7 bits (61), Expect(2) = 0.14
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +2
Query: 200 GGGGGXXGRXXGRGGXPKKKXXXGGGXPXPRXGG 301
G GG G GRGG + GGG R GG
Sbjct: 6 GSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGG 39
Score = 21.8 bits (44), Expect(2) = 0.14
Identities = 9/22 (40%), Positives = 10/22 (45%)
Frame = +2
Query: 392 GGGXGGGXKXKXGEXXGGGGGG 457
GGG GG + G GG G
Sbjct: 37 GGGRGGARGGRGGRGGARGGRG 58
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.6 bits (56), Expect(2) = 0.48
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 495 PPPPPPPP 472
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 495 PPPPPPPP 472
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
Score = 21.8 bits (44), Expect(2) = 0.48
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -2
Query: 411 PPPXPPPXS 385
PPP PPP S
Sbjct: 307 PPPPPPPPS 315
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect(2) = 0.59
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 495 PPPPPPPP 472
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 21.4 bits (43), Expect(2) = 0.59
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = -2
Query: 411 PPPXPPPXSXXK 376
PPP PPP K
Sbjct: 1096 PPPPPPPAEVEK 1107
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = -2
Query: 303 PPPXLGXGXPPPXXXFFFGXPPLPXXLPXFPPPP 202
PPP + PP PP+P P PPPP
Sbjct: 1708 PPPPMSVPPPP-------SAPPMPAGPPSAPPPP 1734
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/43 (30%), Positives = 13/43 (30%)
Frame = -2
Query: 501 KXPPPPPPPPXXXKXXXXXXXXXXXXFXFXPPPXPPPXSXXKG 373
K PPPPPP PP PPP G
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAG 772
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = -2
Query: 303 PPPXLGXGXPPPXXXFFFGXPPLPXXLPXFPPPPP 199
P P +G PPP G P P PPPPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPP-----PPPPP 783
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 495 PPPPPPPP 472
PPPPPPPP
Sbjct: 775 PPPPPPPP 782
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 495 PPPPPPPP 472
PPPPPPPP
Sbjct: 776 PPPPPPPP 783
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 495 PPPPPPPP 472
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 495 PPPPPPPP 472
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 495 PPPPPPPP 472
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 495 PPPPPPPP 472
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 495 PPPPPPPP 472
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 495 PPPPPPPP 472
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.307 0.147 0.470
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,644,934
Number of Sequences: 5004
Number of extensions: 26331
Number of successful extensions: 131
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)
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