Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_K13
(868 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0337 - 24503417-24503523,24503612-24503715,24503828-245039... 76 3e-14
09_02_0119 - 4481522-4481580,4481615-4481718,4483132-4483231,448... 75 7e-14
12_02_0065 - 13109652-13110746,13110843-13111762,13139462-131395... 50 2e-06
11_06_0543 + 24792110-24792229,24792316-24792521,24793770-247944... 29 4.8
02_05_0064 - 25529630-25531440,25531663-25531673,25533113-255331... 29 4.8
07_01_0065 + 466416-467465 28 8.4
>04_04_0337 -
24503417-24503523,24503612-24503715,24503828-24503927,
24504009-24504106,24504403-24504455,24504508-24504588,
24504668-24504739,24504882-24504953,24505045-24505137,
24505240-24505307,24505388-24505658
Length = 372
Score = 76.2 bits (179), Expect = 3e-14
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 11/165 (6%)
Frame = +2
Query: 167 VEDLHKFLDSFDHVLSDCDGVIWTQDSL-PRVGEFFKQMKKRGKTVNFVSNNSLRSRANY 343
+E+ +DS + + DCDGVIW D L V E ++ +GK + FV+NNS +SR Y
Sbjct: 72 LENADALIDSVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQY 131
Query: 344 EAQFKAASIDNGFESLIIPSIAVAEYLKSVTF--NKTVYCVTCTETKRVLEAHGFKCKEG 517
+F+ ++ E + S A A YL+S+ F +K VY + + LE GF+ G
Sbjct: 132 GKKFETLGLNVNEEEIFASSFAAAAYLQSIDFPKDKKVYVIGEDGILKELELAGFQYLGG 191
Query: 518 PDLGPEYY----GEYIQYLEDDEEI----GAVVFDSDFKINLPKM 628
P G + G Y+++ +D I GAVV D N K+
Sbjct: 192 PSDGDKKIELKPGFYMEHDKDVTTIPTLVGAVVVGFDRYFNYYKV 236
>09_02_0119 -
4481522-4481580,4481615-4481718,4483132-4483231,
4483307-4483404,4483688-4483828,4485736-4485788,
4486578-4486649,4487730-4487801,4487895-4487987,
4489040-4489107,4489268-4489358
Length = 316
Score = 74.9 bits (176), Expect = 7e-14
Identities = 46/123 (37%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Frame = +2
Query: 161 LSVEDLHKFLDSFDHVLSDCDGVIWTQDSLPR-VGEFFKQMKKRGKTVNFVSNNSLRSRA 337
L+ + +DS D L DCDGVIW D L V E ++K GK + FV+NNS +SR
Sbjct: 10 LTADAARSLVDSVDAFLFDCDGVIWKGDQLIEGVPETLDLLRKMGKKLVFVTNNSRKSRR 69
Query: 338 NYEAQFKAASIDNGFESLIIPSIAVAEYLKSVTFN--KTVYCVTCTETKRVLEAHGFKCK 511
Y +F+A ++ E + S A A +LK F+ K VY V L GF+C
Sbjct: 70 QYAKKFRALGLEVTEEEIFTSSFAAAMFLKLNNFSPEKKVYVVGEDGILEELRLAGFECL 129
Query: 512 EGP 520
GP
Sbjct: 130 GGP 132
>12_02_0065 -
13109652-13110746,13110843-13111762,13139462-13139528,
13139607-13139675,13139877-13140020,13140100-13140171,
13140316-13140387,13140466-13140558,13140655-13140726,
13140809-13140925
Length = 906
Score = 50.0 bits (114), Expect = 2e-06
Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Frame = +2
Query: 272 KQMKKRGKTVNFVSNNSLRSRANYEAQFKAASIDNGFESLIIPSIAVAEYLKSVTF--NK 445
+ + +GK + FV+NNS +SR Y +F+ ++ E + S A YL+S+ F +K
Sbjct: 58 RHARSKGKRLVFVTNNSTKSRKQYGKKFETLGLNVNEEEIFASSFAYVAYLQSIDFPKDK 117
Query: 446 TVYCVTCTETKRVLEAHGFKCKEGPDLGPEYYG-EYIQYLEDDEEIGAV 589
VY + + LE GF+ GP G + + Y+E D+++ +
Sbjct: 118 KVYVIGEDGILKELELAGFQYLGGPSDGDKKIELKPGFYMEHDKDVTTI 166
>11_06_0543 +
24792110-24792229,24792316-24792521,24793770-24794462,
24794538-24794717,24794793-24795084,24795166-24795375
Length = 566
Score = 29.1 bits (62), Expect = 4.8
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Frame = +2
Query: 269 FKQMKKRGKTVNFVSNNSLRSR-ANYEAQFKAA---SIDNGFESLIIPSIAVAEYLKSVT 436
F++M ++ NF NS + R A + K A S+D+ + P A + S+T
Sbjct: 207 FRRMIRKRDCKNFPRKNSRKMRPATMQDFLKEAGLKSMDDVDNIEMAPLAAQFKLGHSLT 266
Query: 437 FNKTVYCV-TCTETKRVLEAHGFKCKEGPDLGPEYY 541
++ + V CT+ +RV E + KEG ++ P +Y
Sbjct: 267 TDEYRHVVGKCTQMRRVEEWYLQMAKEGKEMFPVFY 302
>02_05_0064 -
25529630-25531440,25531663-25531673,25533113-25533198,
25533412-25534259,25535385-25535736
Length = 1035
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -1
Query: 412 HCDRWNDQALKAVVDAGCFELSFIICSGSKAVIGNEIYCL-PAFLHL 275
HC + +D+ LKAV+ GC L ++ +G + + N + L + +HL
Sbjct: 141 HCRKLSDKGLKAVL-LGCQNLRQLVIAGCRLITDNLLIALSKSCIHL 186
>07_01_0065 + 466416-467465
Length = 349
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 146 KHLLDLSVEDLHKFLDSFDHVLSDCDGVIWTQD 244
K L +S ED+ +FLD FD++ +D G + D
Sbjct: 302 KELGKISQEDISEFLDEFDNLDADHSGTLSPAD 334
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,623,962
Number of Sequences: 37544
Number of extensions: 409609
Number of successful extensions: 918
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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